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Phylogenetic (evolutionary) trees and networks are leaf-labeled graphs that are widely used to represent the evolutionary relationships between entities such as species, languages, cancer cells, and viruses. To reconstruct and analyze…

Data Structures and Algorithms · Computer Science 2023-08-21 Michael J. Dinneen , Pankaj S. Ghodla , Simone Linz

In this paper we use the framework of algebraic effects from programming language theory to analyze the Beta-Bernoulli process, a standard building block in Bayesian models. Our analysis reveals the importance of abstract data types, and…

Programming Languages · Computer Science 2018-09-11 Sam Staton , Dario Stein , Hongseok Yang , Nathanael L. Ackerman , Cameron E. Freer , Daniel M. Roy

We have studied several generalizations of Fibonacci sequences as the sequences with arbitrary initial values, the addition of two and more Fibonacci subsequences and Fibonacci polynomials with arbitrary bases. For Fibonacci numbers with…

History and Overview · Mathematics 2017-07-31 Merve Özvatan , Oktay K. Pashaev

A composition of a nonnegative integer (n) is a sequence of positive integers whose sum is (n). A composition is palindromic if it is unchanged when its terms are read in reverse order. We provide a generating function for the number of…

Combinatorics · Mathematics 2007-05-23 Sergey Kitaev , Tyrrell B. McAllister , T. Kyle Petersen

Many kinds of convolution identities have been considered about several numbers, including Bernoulli, Euler, Genocchi, Cauchy, Stirling, and Fibonacci numbers. The well-known basic result about Bernoulli numbers is due to Euler. The…

Number Theory · Mathematics 2021-03-01 Takao Komatsu , Rusen Li

Place value numbers, such as the binary or decimal numbers can be represented by the end vertices (leaf or pendant vertices) of rooted symmetrical trees. Numbers that consist of at most a fixed number of digits are represented by vertices…

General Mathematics · Mathematics 2017-09-26 Rafael I. Rofa

An interesting open problem in number theory asks whether it is possible to walk to infinity on primes, where each term in the sequence has one more digit than the previous. In this paper, we study its variation where we walk on the…

Number Theory · Mathematics 2022-08-30 Steven J. Miller , Fei Peng , Tudor Popescu , Nawapan Wattanawanichkul

We present tracial analogs of the classical results of Curto and Fialkow on moment matrices. A sequence of real numbers indexed by words in non-commuting variables with values invariant under cyclic permutations of the indexes, is called a…

Functional Analysis · Mathematics 2012-08-27 Sabine Burgdorf , Igor Klep

We study Bernoulli bond percolation on a random recursive tree of size $n$ with percolation parameter $p(n)$ converging to $1$ as $n$ tends to infinity. The sizes of the percolation clusters are naturally stored in a tree. We prove…

Probability · Mathematics 2016-12-28 Erich Baur

Nonlinear complexity, as an important measure for assessing the randomness of sequences, is defined as the length of the shortest feedback shift registers that can generate a given sequence. In this paper, the structure of n-periodic binary…

Information Theory · Computer Science 2026-02-03 Qin Yuan , Chunlei Li , Xiangyong Zeng

We prove that certain sequences of finite continued fractions associated with a 2-periodic continued fraction with period a,b>0 are moment sequences of discrete signed measures supported in the interval [-1,1], and we give necessary and…

Classical Analysis and ODEs · Mathematics 2009-02-10 Christian Berg , Antonio J. Durán

We study compact straight-line embeddings of trees. We show that perfect binary trees can be embedded optimally: a tree with $n$ nodes can be drawn on a $\sqrt n$ by $\sqrt n$ grid. We also show that testing whether a given binary tree has…

Computational Geometry · Computer Science 2018-09-03 Hugo A. Akitaya , Maarten Löffler , Irene Parada

This paper shows that a finite discrete convolution involving Stirling numbers of both kinds and harmonic numbers can be expressed in terms of the Bernoulli numbers. As applications of this expression, the linear recurrence relation for the…

Number Theory · Mathematics 2026-02-04 Levent Kargın , Merve Mutluer

We modify the rules of the classical Tower of Hanoi puzzle in a quite natural way to get the Fibonacci sequence involved in the optimal algorithm of resolution, and show some nice properties of such a variant. In particular, we deduce from…

Discrete Mathematics · Computer Science 2022-06-08 Benoît Rittaud

The Svenonius theorem describes the (first-order) definability in a structure in terms of permutations preserving the relations of elementary extensions of the structure. In the present paper we prove a version of this theorem using…

Logic · Mathematics 2016-05-17 A. L. Semenov , S. F. Soprunov

We give recurrences, generating functions and explicit exact expressions for the enumeration of fundamental quantities involving runs in binary strings. We first focus on enumerations concerning runs of ones, and we then analyse the same…

Combinatorics · Mathematics 2026-02-13 Félix Balado , Guénolé C. M. Silvestre

Peca suggested in a recent paper on the arxiv to consider binary butterfly trees and their Horton-Strahler numbers. The trees are obtained by glueing two binary trees together in a special way; the results are again binary trees but with a…

Combinatorics · Mathematics 2025-10-22 Helmut Prodinger

In this paper we introduce {\em weak ascent sequences}, a class of number sequences that properly contains ascent sequences. We show how these sequences uniquely encode each of the following objects: permutations avoiding a particular…

Combinatorics · Mathematics 2022-10-11 Beáta Bényi , Anders Claesson , Mark Dukes

As part of work to connect phylogenetics with machine learning, there has been considerable recent interest in vector encodings of phylogenetic trees. We present a simple new "ordered leaf attachment" (OLA) method for uniquely encoding a…

Populations and Evolution · Quantitative Biology 2025-03-26 Harry Richman , Cheng Zhang , Frederick A. Matsen

In this paper, algorithms are developed for computing the Stirling transform and the inverse Stirling transform; specifically, we investigate a class of sequences satisfying a two-term recurrence. We derive a general identity which…

Combinatorics · Mathematics 2012-12-06 Mourad Rahmani
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