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A key question in evolution is how likely a mutant is to take over. This depends on natural selection and on stochastic fluctuations. Population spatial structure can impact mutant fixation probabilities. We introduce a model for structured…

Populations and Evolution · Quantitative Biology 2021-11-23 Loïc Marrec , Irene Lamberti , Anne-Florence Bitbol

Diffusive transport is a universal phenomenon, throughout both biological and physical sciences, and models of diffusion are routinely used to interrogate diffusion-driven processes. However, most models neglect to take into account the…

Quantitative Methods · Quantitative Biology 2015-10-28 Paul R. Taylor , Christian A. Yates , Matthew J. Simpson , Ruth E. Baker

Throughout developmental biology and ecology, transport can be driven by nonlocal interactions. Examples include cells that migrate based on contact with pseudopodia extended from other cells, and animals that move based on their vision of…

Pattern Formation and Solitons · Physics 2023-07-07 Thomas Jun Jewell , Andrew L. Krause , Philip K. Maini , Eamonn A. Gaffney

Using a non-perturbative method developed in a previous article (paper II) we investigate the tails of the probability distribution $P(\rho_R)$ of the overdensity within spherical cells. We show that our results for the low-density tail of…

Astrophysics · Physics 2009-11-06 P. Valageas

In nonlinear dynamical systems with highly nonorthogonal linear eigenvectors, linear non-modal analysis is more useful than normal mode analysis in predicting turbulent properties. However, the non-trivial time evolution of non-modal…

Plasma Physics · Physics 2015-06-22 Brett Friedman , Troy A. Carter

The transition to turbulence is characterized by an abrupt loss of order and predictability, featuring the intermittent proliferation and decay of localized turbulent structures. En-route to becoming fully turbulent, surprisingly order…

Fluid Dynamics · Physics 2025-01-15 Roger Ayats , Lukasz Klotz , Björn Hof

The excursion set theory, where density perturbations evolve stochastically with the smoothing scale, provides a method for computing the dark matter halo mass function. The computation of the mass function is mapped into the so-called…

Cosmology and Nongalactic Astrophysics · Physics 2012-01-05 Andrea De Simone , Michele Maggiore , Antonio Riotto

Using a Newtonian approximation, we developed a quantitative criterion for the collapse of a spherical distribution of matter under an isolated texture field. In particular, we found that the evolution of an overdense region is strongly…

Astrophysics · Physics 2009-10-31 A. L. B. Ribeiro , P. S. Letelier

We compute the one-point PDF of an initially Gaussian dark matter density field using spherical collapse (SC). We compare the results to other forms available in the literature and also compare the PDFs in the $\Lambda$CDM model with an…

Cosmology and Nongalactic Astrophysics · Physics 2020-09-08 Ankush Mandal , Sharvari Nadkarni-Ghosh

The effective, fast transport of matter through porous media is often characterized by complex dispersion effects. To describe in mathematical terms such situations, instead of a simple macroscopic equation (as in the classical Darcy's…

Numerical Analysis · Mathematics 2025-05-06 Surendra Nepal , Vishnu Raveendran , Michael Eden , Rainey Lyons , Adrian Muntean

Conventional statistical wisdom established a well-understood relationship between model complexity and prediction error, typically presented as a U-shaped curve reflecting a transition between under- and overfitting regimes. However,…

Machine Learning · Statistics 2023-10-31 Alicia Curth , Alan Jeffares , Mihaela van der Schaar

Using percolation statistics we, for the first time, demonstrate the universal character of a network pattern in the real space, mass distributions resulting from nonlinear gravitational instability of initial Gaussian fluctuations.…

Astrophysics · Physics 2009-10-28 Capp Yess , Sergei F. Shandarin

Building Virtual Cells that can accurately simulate cellular responses to perturbations is a long-standing goal in systems biology. A fundamental challenge is that high-throughput single-cell sequencing is destructive: the same cell cannot…

Machine Learning · Computer Science 2026-02-24 Xinyu Yuan , Xixian Liu , Ya Shi Zhang , Zuobai Zhang , Hongyu Guo , Jian Tang

We present a first principle approach to obtain analytical predictions for spherically-averaged cosmic densities in the mildly non-linear regime that go well beyond what is usually achieved by standard perturbation theory. A large deviation…

Cosmology and Nongalactic Astrophysics · Physics 2016-05-25 Cora Uhlemann , Sandrine Codis , Christophe Pichon , Francis Bernardeau , Paulo Reimberg

We study the effect of nonperturbative corrections associated with the behavior of particles after shell crossing on the matter power spectrum. We compare their amplitude with the perturbative terms that can be obtained within the fluid…

Cosmology and Nongalactic Astrophysics · Physics 2015-05-19 Patrick Valageas

We present three numerical simulations of randomly driven, isothermal, non-magnetic, self-gravitating turbulence with different rms Mach numbers Ms and physical sizes L, but approximately the same value of the virial parameter, alpha approx…

Primordial non-Gaussianity (NG) affects the large scale structure (LSS) of the universe by leaving an imprint on the distribution of matter at late times. Much attention has been focused on using the distribution of collapsed objects (i.e.…

Cosmology and Nongalactic Astrophysics · Physics 2011-02-25 Guido D'Amico , Marcello Musso , Jorge Noreña , Aseem Paranjape

We compute the dark matter halo mass function using the excursion set formalism for a diffusive barrier with linearly drifting average which captures the main features of the ellipsoidal collapse model. We evaluate the non-Markovian…

Cosmology and Nongalactic Astrophysics · Physics 2011-08-22 P. S. Corasaniti , I. Achitouv

We present non-linear solutions of Vlasov Perturbation Theory (VPT), describing gravitational clustering of collisionless dark matter with dispersion and higher cumulants induced by orbit crossing. We show that VPT can be cast into a form…

Cosmology and Nongalactic Astrophysics · Physics 2023-04-05 Mathias Garny , Dominik Laxhuber , Roman Scoccimarro

Context: Analyzing the large-scale structure (LSS) with galaxy surveys demands accurate structure formation models. Such models should ideally be fast and have a clear theoretical framework to rapidly scan a variety of cosmological…

Cosmology and Nongalactic Astrophysics · Physics 2024-02-08 F. -S. Kitaura , F. Sinigaglia , A. Balaguera-Antolínez , G. Favole
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