Related papers: $k$-noncrossing RNA structures with arc-length $\g…

The ribbon number $r(K)$ of a ribbon knot $K \subset S^3$ is the minimal number of ribbon intersections contained in any ribbon disk bounded by $K$. We find new lower bounds for $r(K)$ using $\det(K)$ and $\Delta_K(t)$, and we prove that…

For a knot K in S^3, let T(K) be the characteristic toric sub-orbifold of the orbifold (S^3,K) as defined by Bonahon and Siebenmann. If K has unknotting number one, we show that an unknotting arc for K can always be found which is disjoint…

A Steiner structure $\dS = \dS_q[t,k,n]$ is a set of $k$-dimensional subspaces of $\F_q^n$ such that each $t$-dimensional subspace of $\F_q^n$ is contained in exactly one subspace of $\dS$. Steiner structures are the $q$-analogs of Steiner…

Let c(K;F) denote the surface crossing number of a knot K with respect to a closed connected surface F in S^3. We relate c(K;F) to the tunnel number t(K) and to the Heegaard deficiency delta(F)=g(M_1;F)+g(M_2;F)-g(F), where S^3=M_1 union_F…

In this paper we prove a duality between $k$-noncrossing partitions over $[n]=\{1,...,n\}$ and $k$-noncrossing braids over $[n-1]$. This duality is derived directly via (generalized) vacillating tableaux which are in correspondence to…

A long standing open conjecture states that if a link $\mathcal{K}$ is alternating, then its ropelength $L(\mathcal{K})$ is at least of the order $O(Cr(\mathcal{K}))$. A recent result shows that the maximum braid index of a link bounds the…

Intersecting codes are a classical object in coding theory whose rank-metric analogue has recently been introduced. Although the definition formally parallels the Hamming-metric case, the structure and parameter constraints of rank-metric…

We present a linear programming based algorithm for computing a spanning tree $T$ of a set $P$ of $n$ points in $\Re^d$, such that its crossing number is $O(\min(t \log n, n^{1-1/d}))$, where $t$ the minimum crossing number of any spanning…

We computed the arc index for some of the pretzel knots $K=P(-p,q,r)$ with $p,q,r\ge2$, $r\geq q$ and at most one of $p,q,r$ is even. If $q=2$, then the arc index $\alpha(K)$ equals the minimal crossing number $c(K)$. If $p\ge3$ and $q=3$,…

Three nucleon short range correlations~(SRCs) are one of the most elusive structures in nuclei. Their observation and the subsequent study of their internal makeup will have a significant impact on our understanding of the dynamics of…

Let $\crs(K_n)$ be the minimum number of crossings over all rectilinear drawings of the complete graph on $n$ vertices on the plane. In this paper we prove that $\crs(K_n) < 0.380473\binom{n}{4}+\Theta(n^3)$; improving thus on the previous…

The stable 4-genus of a knot K in 3-space is the limiting value of g_4(nK)/n, where g_4 denotes the 4-genus and n goes to infinity. This induces a seminorm on CQ, the concordance group tensored with the rational numbers. Basic properties of…

Arc-annotated sequences are useful for representing structural information of RNAs and have been extensively used for comparing RNA structures in both terms of sequence and structural similarities. Among the many paradigms referring to…

Functional or non-coding RNAs are attracting more attention as they are now potentially considered valuable resources in the development of new drugs intended to cure several human diseases. The identification of drugs targeting the…

Let L be a simple Euclidean arrangement of n pseudolines. It is shown that if L has exactly one (>=5)=gon P, and k is the number of edges of P that are adjacent to an unbounded cell of the subarrangement of L induced by the pseudolines in…

Given an RNA sequence a, consider the network G = (V;E), where the set V of nodes consists of all secondary structures of a, and whose edge set E consists of all edges connecting two secondary structures whose base pair distance is 1.…

We establish a new fundamental relationship between total curvature of knots and crossing number. If K is a smooth knot in 3-space, R the cross-section radius of a uniform tube neighborhood of K, L the arclength of K, and k the total…

The ongoing effort to detect and characterize physical entanglement in biopolymers has so far established that knots are present in many globular proteins and also abound in viral DNA packaged inside bacteriophages. RNA molecules, on the…

We show that twisted torus knots $T(p,q,3,s)$ are tunnel number one. A short spanning arc connecting two adjacent twisted strands is an unknotting tunnel.

Networks of silicon nanowires possess intriguing electronic properties surpassing the predictions based on quantum confinement of individual nanowires. Employing large-scale atomistic pseudopotential computations, as yet unexplored branched…