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This supplementary material includes three parts: some preliminary results, four examples, an experiment, three new algorithms, and all proofs of the results in the paper "Reversible MCMC on Markov equivalence classes of sparse directed…

Machine Learning · Statistics 2013-08-13 Yangbo He , Jinzhu Jia , Bin Yu

There has been intensive work on the parameterized complexity of the typically NP-hard task to edit undirected graphs into graphs fulfilling certain given vertex degree constraints. In this work, we lift the investigations to the case of…

Discrete Mathematics · Computer Science 2018-02-01 Robert Bredereck , Vincent Froese , Marcel Koseler , Marcelo Garlet Millani , André Nichterlein , Rolf Niedermeier

We introduce the Graph Mixture Density Networks, a new family of machine learning models that can fit multimodal output distributions conditioned on graphs of arbitrary topology. By combining ideas from mixture models and graph…

Machine Learning · Computer Science 2021-06-28 Federico Errica , Davide Bacciu , Alessio Micheli

We investigate topological, combinatorial, statistical, and enumeration properties of finite graphs with high Kolmogorov complexity (almost all graphs) using the novel incompressibility method. Example results are: (i) the mean and variance…

Combinatorics · Mathematics 2007-05-23 Harry Buhrman , Ming Li , John Tromp , Paul Vitanyi

Causal structure learning has been a challenging task in the past decades and several mainstream approaches such as constraint- and score-based methods have been studied with theoretical guarantees. Recently, a new approach has transformed…

Machine Learning · Computer Science 2019-11-19 Ignavier Ng , Shengyu Zhu , Zhitang Chen , Zhuangyan Fang

For polynomials and rational maps of fixed degree over a finite field, we bound both the average number of connected components of their functional graphs as well as the average number of periodic points of their associated dynamical…

Dynamical Systems · Mathematics 2014-07-01 Ryan Flynn , Derek Garton

Global variational approximation methods in graphical models allow efficient approximate inference of complex posterior distributions by using a simpler model. The choice of the approximating model determines a tradeoff between the…

Artificial Intelligence · Computer Science 2013-01-14 Tal El-Hay , Nir Friedman

Conformal prediction has become increasingly popular for quantifying the uncertainty associated with machine learning models. Recent work in graph uncertainty quantification has built upon this approach for conformal graph prediction. The…

Machine Learning · Computer Science 2025-05-21 Pranav Maneriker , Aditya T. Vadlamani , Anutam Srinivasan , Yuntian He , Ali Payani , Srinivasan Parthasarathy

In recent years, Graph Neural Networks (GNNs) have made significant advances in processing structured data. However, most of them primarily adopted a model-centric approach, which simplifies graphs by converting them into undirected formats…

Machine Learning · Computer Science 2024-12-12 Henan Sun , Xunkai Li , Daohan Su , Junyi Han , Rong-Hua Li , Guoren Wang

In graph analyses, directed edges are often approximated to undirected ones so that the adjacency matrices may be symmetric. However, such simplification has not been thoroughly verified. In this study, we investigate how directedness…

Physics and Society · Physics 2022-08-19 Masaki Ochi , Tatsuro Kawamoto

Graphical flows add further structure to normalizing flows by encoding non-trivial variable dependencies. Previous graphical flow models have focused primarily on a single flow direction: the normalizing direction for density estimation, or…

Machine Learning · Computer Science 2022-04-27 Jacobie Mouton , Steve Kroon

Influence diagrams are a directed graph representation for uncertainties as probabilities. The graph distinguishes between those variables which are under the control of a decision maker (decisions, shown as rectangles) and those which are…

Artificial Intelligence · Computer Science 2013-04-12 Ross D. Shachter

We have shown recently that a Markov process conditioned on rare events involving time-integrated random variables can be described in the long-time limit by an effective Markov process, called the driven process, which is given…

Statistical Mechanics · Physics 2015-12-17 Raphael Chetrite , Hugo Touchette

In this paper we investigate aspects of rigidity and flexibility for conformal iterated function systems. For the case in which the systems are not essentially affine we show that two such systems are conformal equivalent if and only if in…

Dynamical Systems · Mathematics 2010-09-10 Marc Kesseböhmer , Bernd O. Stratmann

We consider Bratteli diagrams of finite rank (not necessarily simple) and ergodic invariant measures with respect to the cofinal equivalence relation on their path spaces. It is shown that every ergodic invariant measure (finite or…

Dynamical Systems · Mathematics 2015-03-13 Sergey Bezuglyi , Jan Kwiatkowski , Konstantin Medynets , Boris Solomyak

A relational structure R is ultrahomogeneous if every isomorphism of finite induced substructures of R extends to an automorphism of R. We classify the ultrahomogeneous finite binary relational structures with one asymmetric binary relation…

Combinatorics · Mathematics 2024-08-15 Irene Heinrich , Eda Kaja , Pascal Schweitzer

The Laplacian matrix and its pseudo-inverse for a strongly connected directed graph is fundamental in computing many properties of a directed graph. Examples include random-walk centrality and betweenness measures, average hitting and…

Numerical Analysis · Mathematics 2020-09-16 Daniel Boley

We develop terminology and methods for working with maximally oriented partially directed acyclic graphs (maximal PDAGs). Maximal PDAGs arise from imposing restrictions on a Markov equivalence class of directed acyclic graphs, or…

Statistics Theory · Mathematics 2018-06-20 Emilija Perković , Markus Kalisch , Maloes H. Maathuis

We initiate the study of deterministic distributed graph algorithms with predictions in synchronous message passing systems. The process at each node in the graph is given a prediction, which is some extra information about the problem…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-01 Joan Boyar , Faith Ellen , Kim S. Larsen

In causal inference on directed acyclic graphs, the orientation of edges is in general only recovered up to Markov equivalence classes. We study Markov equivalence classes of uniformly random directed acyclic graphs. Using a tower…

Probability · Mathematics 2024-10-01 Dominik Schmid , Allan Sly