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Related papers: Structure Learning in Nested Effects Models

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Neural networks are powerful predictive models, but they provide little insight into the nature of relationships between predictors and outcomes. Although numerous methods have been proposed to quantify the relative contributions of input…

Methodology · Statistics 2023-01-30 Francesca Mandel , Ian Barnett

Graph neural networks (GNNs) naturally align with sparse operators and unstructured discretizations, making them a promising paradigm for physics-informed machine learning in computational mechanics. Motivated by discrete physics losses and…

Machine Learning · Computer Science 2026-02-10 Jianchuan Yang , Xi Chen , Jidong Zhao

Network representation learning has exploded recently. However, existing studies usually reconstruct networks as sequences or matrices, which may cause information bias or sparsity problem during model training. Inspired by a cognitive…

Machine Learning · Computer Science 2019-10-01 Jie Bai , Linjing Li , Daniel Zeng

We present GraphMoE, a novel neural network-based approach to learning generative models for random graphs. The neural network is trained to match the distribution of a class of random graphs by way of a moment estimator. The features used…

Machine Learning · Statistics 2022-04-19 Vittorio Loprinzo , Laurent Younes

Whole-brain network analyses remain the vanguard in neuroimaging research, coming to prominence within the last decade. Network science approaches have facilitated these analyses and allowed examining the brain as an integrated system.…

Applications · Statistics 2015-05-04 Sean L. Simpson , Paul J. Laurienti

Label noise in training data can significantly degrade a model's generalization performance for supervised learning tasks. Here we focus on the problem that noisy labels are primarily mislabeled samples, which tend to be concentrated near…

Machine Learning · Computer Science 2021-03-16 Hao-Chiang Shao , Hsin-Chieh Wang , Weng-Tai Su , Chia-Wen Lin

This paper investigates the problem of network embedding, which aims at learning low-dimensional vector representation of nodes in networks. Most existing network embedding methods rely solely on the network structure, i.e., the linkage…

Social and Information Networks · Computer Science 2016-10-19 Xiaofei Sun , Jiang Guo , Xiao Ding , Ting Liu

Named Entity Recognition (NER) is a fundamental Natural Language Processing (NLP) task to extract entities from unstructured data. The previous methods for NER were based on machine learning or deep learning. Recently, pre-training models…

Computation and Language · Computer Science 2020-02-21 Yu Wang , Yining Sun , Zuchang Ma , Lisheng Gao , Yang Xu , Ting Sun

Nested named entity recognition (NER) aims to identify the entity boundaries and recognize categories of the named entities in a complex hierarchical sentence. Some works have been done using character-level, word-level, or lexicon-level…

Computation and Language · Computer Science 2022-11-08 Yuan Sui , Fanyang Bu , Yingting Hu , Wei Yan , Liang Zhang

We cast nested named entity recognition (NNER) as a sequence labeling task by leveraging prior work that linearizes constituency structures, effectively reducing the complexity of this structured prediction problem to straightforward token…

Computation and Language · Computer Science 2025-09-30 Alberto Muñoz-Ortiz , David Vilares , Caio Corro , Carlos Gómez-Rodríguez

Multi-label image classification has generated significant interest in recent years and the performance of such systems often suffers from the not so infrequent occurrence of incorrect or missing labels in the training data. In this paper,…

Computer Vision and Pattern Recognition · Computer Science 2020-05-05 Zhuolin Jiang , Jan Silovsky , Man-Hung Siu , William Hartmann , Herbert Gish , Sancar Adali

Deep neural networks (DNNs) have shown exceptional performances in a wide range of tasks and have become the go-to method for problems requiring high-level predictive power. There has been extensive research on how DNNs arrive at their…

Machine Learning · Computer Science 2023-02-21 Mattias Luber , Anton Thielmann , Benjamin Säfken

This paper addresses the challenging problem of retrieval and matching of graph structured objects, and makes two key contributions. First, we demonstrate how Graph Neural Networks (GNN), which have emerged as an effective model for various…

Machine Learning · Computer Science 2019-05-14 Yujia Li , Chenjie Gu , Thomas Dullien , Oriol Vinyals , Pushmeet Kohli

An approach to improve neural network interpretability is via clusterability, i.e., splitting a model into disjoint clusters that can be studied independently. We define a measure for clusterability and show that pre-trained models form…

Machine Learning · Computer Science 2025-07-28 Satvik Golechha , Maheep Chaudhary , Joan Velja , Alessandro Abate , Nandi Schoots

Training deep neural networks (DNNs) from noisy labels is an important and challenging task. However, most existing approaches focus on the corrupted labels and ignore the importance of inherent data structure. To bridge the gap between…

Machine Learning · Computer Science 2024-05-03 Zijia Wang , Wenbin Yang , Zhisong Liu , Zhen Jia

A core challenge in the interpretation of deep neural networks is identifying commonalities between the underlying algorithms implemented by distinct networks trained for the same task. Motivated by this problem, we introduce DYNAMO, an…

Machine Learning · Computer Science 2023-03-01 Jordan Cotler , Kai Sheng Tai , Felipe Hernández , Blake Elias , David Sussillo

High-throughput data analyses are becoming common in biology, communications, economics and sociology. The vast amounts of data are usually represented in the form of matrices and can be considered as knowledge networks. Spectra-based…

Quantitative Methods · Quantitative Biology 2010-01-06 Viet-Anh Nguyen , Zdena Koukolikova-Nicola , Franco Bagnoli , Pietro Lio

Named entity recognition (NER) is the task to identify mentions of rigid designators from text belonging to predefined semantic types such as person, location, organization etc. NER always serves as the foundation for many natural language…

Computation and Language · Computer Science 2023-04-26 Jing Li , Aixin Sun , Jianglei Han , Chenliang Li

Genetic mutations can cause disease by disrupting normal gene function. Identifying the disease-causing mutations from millions of genetic variants within an individual patient is a challenging problem. Computational methods which can…

Machine Learning · Computer Science 2021-06-28 Jun Cheng , Carolin Lawrence , Mathias Niepert

In this paper we describe a general probabilistic framework for modeling waveforms such as heartbeats from ECG data. The model is based on segmental hidden Markov models (as used in speech recognition) with the addition of random effects to…

Applications · Statistics 2012-07-19 Seyoung Kim , Padhraic Smyth , Stefan Luther