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We present feature finding and tracking algorithms in 3D in living cells, and demonstrate their utility to measure metrics important in cell biological processes. We developed a computational imaging hybrid approach that combines automated…

Biological Physics · Physics 2015-04-06 Kemp Plumb , Sarah Elaz , Vincent Pelletier , Maria L. Kilfoil

We study phase transitions in a long-range one-dimensional cellular automaton with two symmetric absorbing states. It includes and extends several other models, like the Ising and Domany-Kinzel ones. It is characterized by a competing…

Statistical Mechanics · Physics 2007-05-23 F. Bagnoli , F. Franci , R. Rechtman

How do cellular automata behave in the limit of a very large number of cells? Is there a continuum limit with simple properties? We attack this problem by mapping certain classes of automata to quantum field theories for which powerful…

Cellular Automata and Lattice Gases · Physics 2022-12-08 C. Wetterich

We introduce an Active Vertex Model (AVM) for cell-resolution studies of the mechanics of confluent epithelial tissues consisting of tens of thousands of cells, with a level of detail inaccessible to similar methods. The AVM combines the…

Biological Physics · Physics 2016-12-20 Daniel L. Barton , Silke Henkes , Cornelis J. Weijer , Rastko Sknepnek

We define and study a few properties of a class of random automata networks. While regular finite one-dimensional cellular automata are defined on periodic lattices, these automata networks, called randomized cellular automata, are defined…

Cellular Automata and Lattice Gases · Physics 2009-11-13 Nino Boccara

Three cellular automaton (CA) models of increasing complexity are introduced to model driven diffusive systems related to the generalized Frenkel-Kontorova (FK) models recently proposed by Braun [Phys.Rev.E58, 1311 (1998)]. The models are…

Condensed Matter · Physics 2009-10-31 Bing-Hong Wang , Y. R. Kwong , P. M. Hui , Bambi Hu

This paper presents a novel approach to the description and understanding of two-dimensional binary cellular automata with the Moore neighborhood that preserve the number of active cells. Such dynamical systems are known to successfully…

Dynamical Systems · Mathematics 2025-12-10 B. Wolnik , D. M. Falkiewicz , W. Bołt , A. Rutkowski , B. De Baets

Cell-free massive multiple-input multiple-output is a potential candidate for future networks with pervasive connectivity by utilizing coherent joint transmission and distributed antenna arrays. This paper studies the exploitation of…

Signal Processing · Electrical Eng. & Systems 2026-04-14 Trinh Van Chien , Bui Trong Duc , Mohammadali Mohammadi , Hien Quoc Ngo , Michail Matthaiou

A family of reversible deterministic cellular automata, including the rules 54 and 201 of [Bobenko et al., Commun. Math. Phys. 158, 127 (1993)] as well as their kinetically constrained quantum (unitary) or stochastic deformations, is shown…

Statistical Mechanics · Physics 2021-06-04 Tomaz Prosen

We study the dynamics of (synchronous) one-dimensional cellular automata with cyclical boundary conditions that evolve according to the majority rule with radius $ r $. We introduce a notion that we term cell stability with which we express…

Discrete Mathematics · Computer Science 2022-06-06 Yonatan Nakar , Dana Ron

Topological transitivity is a fundamental notion in topological dynamics and is widely regarded as a basic indicator of global dynamical complexity. For general cellular automata, topological transitivity is known to be undecidable. By…

Formal Languages and Automata Theory · Computer Science 2026-01-26 Niccolò Castronuovo , Alberto Dennunzio , Luciano Margara

In order to describe two-dimensionally packed cells in epithelial tissues both mathematically and physically, there have been developed several sorts of geometrical models, such as the vertex model, the finite element model, the…

Biological Physics · Physics 2014-11-19 Yukitaka Ishimoto , Yoshihiro Morishita

This paper studies complexity of recognition of classes of bounded configurations by a generalization of conventional cellular automata (CA) -- finite dynamic cellular automata (FDCA). Inspired by the CA-based models of biological and…

Computational Complexity · Computer Science 2007-05-23 Maxim Makatchev

While for synchronous deterministic cellular automata there is an accepted definition of reversibility, the situation is less clear for asynchronous cellular automata. We first discuss a few possibilities and then investigate what we call…

Formal Languages and Automata Theory · Computer Science 2012-08-15 Simon Wacker , Thomas Worsch

We present a 2-dimensional cellular automaton model for the simulation of pedestrian dynamics. The model is extremely efficient and allows simulations of large crowds faster than real time since it includes only nearest-neighbour…

Statistical Mechanics · Physics 2007-05-23 Andreas Schadschneider

It is well-known that the spacetime diagrams of some cellular automata have a fractal structure: for instance Pascal's triangle modulo 2 generates a Sierpinski triangle. Explaining the fractal structure of the spacetime diagrams of cellular…

Discrete Mathematics · Computer Science 2010-11-02 Johannes Gütschow , Vincent Nesme , Reinhard F. Werner

Commonly studied cellular automata are memoryless and have fixed topology of connections between cells. However by allowing updates of links and short-term memory in cells we may potentially discover novel complex regimes of spatio-temporal…

Cellular Automata and Lattice Gases · Physics 2012-12-13 Ramon Alonso-Sanz , Andrew Adamatzky

We formulate a new concept for computing with quantum cellular automata composed of arrays of nanostructured superconducting devices. The logic states are defined by the position of two trapped flux quanta (vortices) in a 2x2…

Superconductivity · Physics 2009-11-13 M. V. Milosevic , G. R. Berdiyorov , F. M. Peeters

Cellular Automata (CA) are discrete dynamical systems and an abstract model of parallel computation. The limit set of a cellular automaton is its maximal topological attractor. A well know result, due to Kari, says that all nontrivial…

Dynamical Systems · Mathematics 2009-02-10 Pietro Di Lena , Luciano Margara

Following work by Hochman and Meyerovitch on multidimensional SFT, we give computability-theoretic characterizations of the real numbers that can appear as the topological entropies of one-dimensional and two-dimensional cellular automata.

Computational Complexity · Computer Science 2012-04-05 Pierre Guillon , Charalampos Zinoviadis
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