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Physical systems are frequently modeled as sets of points in space, each representing the position of an atom, molecule, or mesoscale particle. As many properties of such systems depend on the underlying ordering of their constituent…

Other Condensed Matter · Physics 2015-11-18 Emanuel A. Lazar , Jian Han , David J. Srolovitz

Soft gels, formed via the self-assembly of particulate organic materials, exhibit intricate multi-scale structures that provides them with flexibility and resilience when subjected to external stresses. This work combines molecular…

Soft Condensed Matter · Physics 2024-04-05 Alexander Smith , Gavin J. Donley , Emanuela Del Gado , Victor M. Zavala

Interacting, self-propelled particles such as epithelial cells can dynamically self-organize into complex multicellular patterns, which are challenging to classify without a priori information. Classically, different phases and phase…

Quantitative Methods · Quantitative Biology 2021-01-19 Dhananjay Bhaskar , William Y. Zhang , Ian Y. Wong

We present a generalization of free fermionic topological insulators that are composed of topological subsystems of differing dimensionality. We specifically focus on topological subsystems of nonzero co-dimension are embedded within a…

Mesoscale and Nanoscale Physics · Physics 2019-09-18 Thomas I. Tuegel , Victor Chua , Taylor L. Hughes

The thermodynamic entropy of coarse-grained (CG) models stands as one of the most important properties for quantifying the missing information during the CG process and for establishing transferable (or extendible) CG interactions. However,…

Chemical Physics · Physics 2024-04-10 Jaehyeok Jin , David R. Reichman

Topological order in two-dimensional systems is studied by combining the braid group formalism with a gauge invariance analysis. We show that flux insertions (or large gauge transformations) pertinent to the toroidal topology induce…

Strongly Correlated Electrons · Physics 2007-05-23 Masatoshi Sato , Mahito Kohmoto , Yong-Shi Wu

Structural organization and correlations are studied in very large packings of equally sized acrylic spheres, reconstructed in three-dimensions by means of X-ray computed tomography. A novel technique, devised to analyze correlations among…

Soft Condensed Matter · Physics 2007-09-19 Tomaso Aste

We show that in codimension at least 3, spaces of locally flat topological embeddings of manifolds are correctly modelled by derived spaces of maps between their configuration categories (under mild smoothability conditions). That general…

Algebraic Topology · Mathematics 2024-10-01 Pedro Boavida de Brito , Michael S. Weiss

These notes review a description of quantum mechanics in terms of the topology of spaces, basing on the axioms of Topological Quantum Field Theory and path integral formalism. In this description quantum states and operators are encoded by…

Quantum Physics · Physics 2025-07-29 Dmitry Melnikov

We probe the complex rheology of nearly ideal 3d foam by flowing through a narrow column. The foams we investigate have large bubble size, to minimize the effects of coarsening, and are very dry. Foams of this type cannot be studied via…

Soft Condensed Matter · Physics 2014-04-11 C. D. Jones , K. N. Nordstrom , D. J. Durian

We investigate the morphology of a toroidal fluid membrane vesicle confined inside a spherical container. The equilibrium shapes are assembled in a geometrical phase diagram as a function of scaled area and reduced volume of the membrane.…

Biological Physics · Physics 2015-10-21 Lila Bouzar , Ferhat Menas , Martin Michael Müller

State-of-the-art representations of volumetric multi-scale shape and structure can be classified into three broad categories: continuous, continuous-from-discrete, and discrete representations. We propose modeling micro-structure with a…

Computational Geometry · Computer Science 2020-05-15 Meera Sitharam , Jeremy Youngquist , Maxwell Nolan , Jörg Peters

A convenient measure of a map or flow's chaotic action is the topological entropy. In many cases, the entropy has a homological origin: it is forced by the topology of the space. For example, in simple toral maps, the topological entropy is…

Dynamical Systems · Mathematics 2013-05-28 Sarah Tumasz , Jean-Luc Thiffeault

We rewrite classical topological definitions using the category-theoretic notation of arrows and are led to concise reformulations in terms of simplicial categories and orthogonality of morphisms, which we hope might be of use in the…

Category Theory · Mathematics 2018-07-19 Misha Gavrilovich , Konstantin Pimenov

Surgical Scene Graphs abstract the complexity of surgical operating rooms (OR) into a structure of entities and their relations, but existing paradigms suffer from strictly dyadic structural limitations. Frameworks that predominantly rely…

Computer Vision and Pattern Recognition · Computer Science 2026-03-11 Tony Danjun Wang , Ka Young Kim , Tolga Birdal , Nassir Navab , Lennart Bastian

Topology diagrams are widely seen in power system applications, but their automatic generation is often easier said than done. When facing power transmission systems with strongly-meshed structures, existing approaches can hardly produce…

Systems and Control · Electrical Eng. & Systems 2023-03-21 Jingyu Wang , Jinfu Chen , Dongyuan Shi , Xianzhong Duan

The dual to a tetrahedron consists of a single vertex at which four edges and six faces are incident. Along each edge, three faces converge. A 2-foam is a compact topological space such that each point has a neighborhood homeomorphic to a…

Geometric Topology · Mathematics 2012-10-15 J. Scott Carter

The methods of statistical mechanics are applied to two-dimensional foams under macroscopic agitation. A new variable -- the total cell curvature -- is introduced, which plays the role of energy in conventional statistical thermodynamics.…

Soft Condensed Matter · Physics 2011-11-10 Marc Durand

Every transformation monoid comes equipped with a canonical topology-the topology of pointwise convergence. For some structures, the topology of the endomorphism monoid can be reconstructed from its underlying abstract monoid. This…

Logic · Mathematics 2017-03-23 Christian Pech , Maja Pech

A simple model of spacetime foam, made by N wormholes in a semiclassical approximation, is taken under examination. We show that the Bekenstein-Hawking entropy is here ``quantized'' in agreement with the heuristic calculation of Bekenstein.

High Energy Physics - Theory · Physics 2009-10-31 Remo Garattini