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We consider the problem of reconstructing 2D images from randomly under-sampled confocal microscopy samples. The well known and widely celebrated total variation regularization, which is the L1 norm of derivatives, turns out to be…

Image and Video Processing · Electrical Eng. & Systems 2019-09-04 Bibin Francis , Manoj Mathew , Muthuvel Arigovindan

In this paper, we provide a novel method for the estimation of unknown parameters of the Gaussian Mixture Model (GMM) in Positron Emission Tomography (PET). A vast majority of PET imaging methods are based on reconstruction model that is…

Signal Processing · Electrical Eng. & Systems 2023-06-30 Tomislav Matulić , Damir Seršić

We establish the theoretical framework for implementing the maximumn entropy on the mean (MEM) method for linear inverse problems in the setting of approximate (data-driven) priors. We prove a.s. convergence for empirical means and further…

Machine Learning · Statistics 2024-12-25 Matthew King-Roskamp , Rustum Choksi , Tim Hoheisel

This study investigates the reconstruction of hyperspectral signatures from RGB data to enhance surgical imaging, utilizing the publicly available HeiPorSPECTRAL dataset from porcine surgery and an in-house neurosurgery dataset. Various…

Image and Video Processing · Electrical Eng. & Systems 2024-10-18 Tobias Czempiel , Alfie Roddan , Maria Leiloglou , Zepeng Hu , Kevin O'Neill , Giulio Anichini , Danail Stoyanov , Daniel Elson

Electron ptychography describes a family of algorithms which are used to enable the reconstruction of complex specimen transmission functions of a sample in order to obtain both phase and amplitude information, as applied within the realms…

Optics · Physics 2025-03-17 L. Clark , P. D. Nellist

This study presents a practical and dose-efficient strategy for resolution enhancement in planar radiography, based on mechanically supersampled acquisition with high-Z photon-counting detectors (PCDs). Unlike prior event-based or cluster…

The Maximum Entropy Method (MEM) is a popular data analysis technique based on Bayesian inference, which has found various applications in the research literature. While the MEM itself is well-grounded in statistics, I argue that its…

Data Analysis, Statistics and Probability · Physics 2020-11-03 Alexander Rothkopf

While transmission electron microscopes (TEM) can achieve a much higher resolution than optical microscopes, they face challenges of damage to samples during the high energy processes involved. Here, we explore using computational ghost…

The advent of synchrotron sources has led to an increasing availability of high resolution Compton Profiles J(pz) and a consequent renewed interest in the reconstruction of the corresponding full momentum densities rho(p). We present…

Materials Science · Physics 2016-08-31 G. Kontrym-Sznajd , M. Samsel , R. N. West

Snapshot back-ended reduced basis methods for dynamical systems commonly rely on the singular value decomposition of a matrix whose columns are high-fidelity solution vectors. An alternative basis generation framework is developed here. The…

Numerical Analysis · Mathematics 2020-05-05 Fotios Kasolis , Markus Clemens

In practice, the finite number of samples of the spherical radiation pattern or antenna gain are taken on the sphere for both the reconstruction of the antenna radiation pattern and the computation of mobile handset performance measures…

Signal Processing · Electrical Eng. & Systems 2018-12-03 Umair Ahmed , Zubair Khalid

Central to the application of many multi-view geometry algorithms is the extraction of matching points between multiple viewpoints, enabling classical tasks such as camera pose estimation and 3D reconstruction. Many approaches that…

Computer Vision and Pattern Recognition · Computer Science 2021-10-15 Alexander Mai , Allen Yang , Dominique E. Meyer

Modern electron tomography has progressed to higher resolution at lower doses by leveraging compressed sensing methods that minimize total variation (TV). However, these sparsity-emphasized reconstruction algorithms introduce tunable…

Medical Physics · Physics 2023-09-12 William Millsaps , Jonathan Schwartz , Zichao Wendy Di , Yi Jiang , Robert Hovden

Lorentz Transmission Electron Microscopy (TEM) observations of magnetic nanoparticles contain information on the magnetic and electrostatic potentials. Vector Field Electron Tomography (VFET) can be used to reconstruct electromagnetic…

Computation · Statistics 2017-04-28 Prabhat KC , K. Aditya Mohan , Charudatta Phatak , Charles Bouman , Marc De Graef

Accurate computational ptychographic phase reconstructions are enabled by fast direct-electron cameras with high dynamic ranges used for four-dimensional scanning transmission electron microscopy (4D-STEM). The availability of open software…

Materials Science · Physics 2025-05-01 Toma Susi

We report the first experimental test of an analytic image reconstruction algorithm for optical tomography with large data sets. Using a continuous-wave optical tomography system with 10^8 source-detector pairs, we demonstrate the…

Medical Physics · Physics 2007-05-23 Zheng-Min Wang , George Y. Panasyuk , Vadim A. Markel , John C. Schotland

It is not obvious how to extend Shannon's original information entropy to higher dimensions, and many different approaches have been tried. We replace the English text symbol sequence originally used to illustrate the theory by a discrete,…

Information Theory · Computer Science 2016-09-06 Kieran G. Larkin

Determining the 3D structures of biological molecules is a key problem for both biology and medicine. Electron Cryomicroscopy (Cryo-EM) is a promising technique for structure estimation which relies heavily on computational methods to…

Machine Learning · Statistics 2015-01-29 Ali Punjani , Marcus A. Brubaker

We propose in this paper a novel, information-theoretic method, called MaxEnt, for efficient data acquisition for low-rank matrix recovery. This proposed method has important applications to a wide range of problems, including image…

Methodology · Statistics 2019-01-30 Simon Mak , Yao Xie

Determining the three-dimensional structure of proteins and protein complexes at atomic resolution is a fundamental task in structural biology. Over the last decade, remarkable progress has been made using "single particle" cryo-electron…

Numerical Analysis · Mathematics 2017-06-05 Alex Barnett , Leslie Greengard , Andras Pataki , Marina Spivak