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Kernels on graphs have had limited options for node-level problems. To address this, we present a novel, generalized kernel for graphs with node feature data for semi-supervised learning. The kernel is derived from a regularization…

Machine Learning · Computer Science 2022-11-29 Yin-Cong Zhi , Felix L. Opolka , Yin Cheng Ng , Pietro Liò , Xiaowen Dong

Motivated by chemical applications, we revisit and extend a family of positive definite kernels for graphs based on the detection of common subtrees, initially proposed by Ramon et al. (2003). We propose new kernels with a parameter to…

Quantitative Methods · Quantitative Biology 2016-08-16 Pierre Mahé , Jean-Philippe Vert

Let $D$ be a digraph. We call a subset $N$ of $V(D)$ $k$-independent if for every pair of vertices $u,v \in N$, $d(u,v) \geq k$; and we call it $\ell$-absorbent if for every vertex $u \in V(D) \setminus N$, there exists $v \in N$ such that…

Combinatorics · Mathematics 2019-12-24 Alonso Ali , Orlando Lee

Many algorithms for ranked data become computationally intractable as the number of objects grows due to the complex geometric structure induced by rankings. An additional challenge is posed by partial rankings, i.e. rankings in which the…

Machine Learning · Computer Science 2022-07-19 Michelangelo Conserva , Marc Peter Deisenroth , K S Sesh Kumar

In graph realization problems one is given a degree sequence and the task is to decide whether there is a graph whose vertex degrees match to the given sequence. This realization problem is known to be polynomial-time solvable when the…

Computational Complexity · Computer Science 2012-01-18 Sepp Hartung , André Nichterlein

We present novel graph kernels for graphs with node and edge labels that have ordered neighborhoods, i.e. when neighbor nodes follow an order. Graphs with ordered neighborhoods are a natural data representation for evolving graphs where…

Machine Learning · Computer Science 2018-05-30 Moez Draief , Konstantin Kutzkov , Kevin Scaman , Milan Vojnovic

A digraph such that every proper induced subdigraph has a kernel is said to be \emph{kernel perfect} (KP for short) (\emph{critical kernel imperfect} (CKI for short) resp.) if the digraph has a kernel (does not have a kernel resp.). The…

Combinatorics · Mathematics 2023-06-22 H. Galeana-Sánchez , M. Olsen

Motivated by dynamic graph visualization, we study the problem of representing a graph $G$ in the form of a \emph{storyplan}, that is, a sequence of frames with the following properties. Each frame is a planar drawing of the subgraph of $G$…

A graph $G = (V, E)$ is \emph{partitionable} if there exists a partition $\{A, B\}$ of $V$ such that $A$ induces a disjoint union of cliques and $B$ induces a triangle-free graph. In this paper we investigate the computational complexity of…

Computational Complexity · Computer Science 2015-01-06 Faisal N. Abu-Khzam , Carl Feghali , Haiko Müller

Testing whether there is an induced path in a graph spanning k given vertices is already NP-complete in general graphs when k=3. We show how to solve this problem in polynomial time on claw-free graphs, when k is not part of the input but…

Discrete Mathematics · Computer Science 2016-12-15 Jiri Fiala , Marcin Kaminski , Bernard Lidicky , Daniel Paulusma

While kernel methods and Graph Neural Networks offer complementary strengths, integrating the two has posed challenges in efficiency and scalability. The Graph Neural Tangent Kernel provides a theoretical bridge by interpreting GNNs through…

Machine Learning · Computer Science 2025-07-17 Lin Wang , Shijie Wang , Sirui Huang , Qing Li

Graph Convolutional Networks (GCNs) have emerged as powerful tools for learning on network structured data. Although empirically successful, GCNs exhibit certain behaviour that has no rigorous explanation -- for instance, the performance of…

Machine Learning · Computer Science 2023-11-07 Mahalakshmi Sabanayagam , Pascal Esser , Debarghya Ghoshdastidar

A graph $G$ is $H$-induced-saturated if $G$ is $H$-free but deleting any edge or adding any edge creates an induced copy of $H$. There are non-trivial graphs $H$, such as $P_4$, for which no finite $H$-induced-saturated graph $G$ exists. We…

Combinatorics · Mathematics 2025-09-03 Marthe Bonamy , Carla Groenland , Tom Johnston , Natasha Morrison , Alex Scott

The design of neural architectures for structured objects is typically guided by experimental insights rather than a formal process. In this work, we appeal to kernels over combinatorial structures, such as sequences and graphs, to derive…

Neural and Evolutionary Computing · Computer Science 2017-10-31 Tao Lei , Wengong Jin , Regina Barzilay , Tommi Jaakkola

Determining whether two graphs are structurally identical is a fundamental problem with applications spanning mathematics, computer science, chemistry, and network science. Despite decades of study, graph isomorphism remains a challenging…

Computational Physics · Physics 2026-04-10 Sara Najem , Amer E. Mouawad

In this paper, we consider a structural and geometric property of graphs, namely the presence of large expanders. The problem of finding such structures was first considered by Krivelevich [SIAM J. Disc. Math. 32 1 (2018)]. Here, we show…

Combinatorics · Mathematics 2023-02-22 Baptiste Louf , Fiona Skerman

A graph $G$ is well-covered if every minimal vertex cover of $G$ is minimum, and a graph $G$ is well-dominated if every minimal dominating set of $G$ is minimum. Studies on well-covered graphs were initiated in [Plummer, JCT 1970], and…

Combinatorics · Mathematics 2022-08-19 Akanksha Agrawal , Henning Fernau , Philipp Kindermann , Kevin Mann , Uéverton S. Souza

Given a digraph $G$, a set $X\subseteq V(G)$ is said to be absorbing set (resp. dominating set) if every vertex in the graph is either in $X$ or is an in-neighbour (resp. out-neighbour) of a vertex in $X$. A set $S\subseteq V(G)$ is said to…

Discrete Mathematics · Computer Science 2021-11-09 Mathew C. Francis , Pavol Hell , Dalu Jacob

Nowhere dense classes of graphs are very general classes of uniformly sparse graphs with several seemingly unrelated characterisations. From an algorithmic perspective, a characterisation of these classes in terms of uniform quasi-wideness,…

Discrete Mathematics · Computer Science 2018-09-06 Stephan Kreutzer , Roman Rabinovich , Sebastian Siebertz

Graph neural networks (GNNs) have various practical applications, such as drug discovery, recommendation engines, and chip design. However, GNNs lack transparency as they cannot provide understandable explanations for their predictions. To…

Machine Learning · Computer Science 2023-06-09 Samidha Verma , Burouj Armgaan , Sourav Medya , Sayan Ranu