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We develop numerical and analytical approaches to calculate mutual information between complete paths of two molecular components embedded into a larger reaction network. In particular, we focus on a continuous-time Markov chain formalism,…

Molecular Networks · Quantitative Biology 2022-08-09 Anne-Lena Moor , Christoph Zechner

Observations on the past provide some hints about what will happen in the future, and this can be quantified using information theory. The ``predictive information'' defined in this way has connections to measures of complexity that have…

Statistical Mechanics · Physics 2007-05-23 William Bialek , Naftali Tishby

We propose predictive information, that is information between a long past of duration T and the entire infinitely long future of a time series, as a universal order parameter to study phase transitions in physical systems. It can be used,…

Statistical Mechanics · Physics 2014-02-04 Martin Tchernookov , Ilya Nemenman

Stochastic forces in natural systems are rarely isotropic. From hydrodynamically coupled colloids to chemical reaction networks, noise contributions are inherently correlated. Together with internal interactions and changing environments,…

Statistical Mechanics · Physics 2026-05-14 Andrea Marchetti , Daniel Maria Busiello , Giorgio Nicoletti

As high-dimensional and high-frequency data are being collected on a large scale, the development of new statistical models is being pushed forward. Functional data analysis provides the required statistical methods to deal with large-scale…

Statistics Theory · Mathematics 2020-07-08 Israel Martínez-Hernández , Marc G. Genton

Living systems often function with regulatory interactions, but the question of how activity, stochasticity and regulations work together for achieving different goals still remains puzzling. We propose a stochastic model of an active…

Soft Condensed Matter · Physics 2026-03-02 Tai Han , Fanlong Meng

We propose a new measure to estimate the direction of information flux in multivariate time series from complex systems. This measure, based on the slope of the phase spectrum (Phase Slope Index) has invariance properties that are important…

In recent years a statistical mechanics description of particles, fields and spacetime based on the concept of quantum open systems and the influence functional formalism has been introduced. It reproduces in full the established theory of…

General Relativity and Quantum Cosmology · Physics 2016-08-31 B. L. Hu

The exchange of "information" between a system and its environment based on the reduced dynamics is investigated. The association of trace distance with information cannot be stated, because of lack of symmetry between leakage from the…

Quantum Physics · Physics 2016-04-05 Filip A. Wudarski , Francesco Petruccione

Life depends as much on the flow of information as on the flow of energy. Here we review the many efforts to make this intuition precise. Starting with the building blocks of information theory, we explore examples where it has been…

Quantitative Methods · Quantitative Biology 2014-12-31 Gašper Tkačik , William Bialek

This work addresses the problem of learning the dynamics of high-dimensional probability densities over time using unlabeled samples, without assuming access to trajectory information. We introduce two-parameter flows that learn only…

Machine Learning · Computer Science 2026-05-27 Paul Schwerdtner , Tobias Blickhan , Benjamin Peherstorfer

In this article, we introduce the notion of stochastic symmetry of a differential equation. It consists in a stochastic flow that acts over a solution of a differential equation and produces another solution of the same equation. In the…

Probability · Mathematics 2011-12-19 Pedro J. Catuogno , Luis R. Lucinger

Phase transitions abound in nature and society, and, from species extinction to stock market collapse, their prediction is of widespread importance. In earlier work we showed that Global Transfer Entropy, a general measure of information…

Statistical Mechanics · Physics 2021-04-12 Joshua Brown , Terry Bossomaier , Lionel Barnett

In this work we build a theoretical framework for the transport of information in quantum systems. This is a framework aimed at describing how out of equilibrium open quantum systems move information around their state space, using an…

Quantum Physics · Physics 2021-07-23 F. Anza

A basic task of information processing is information transfer (flow). Here we study a pair of Brownian particles each coupled to a thermal bath at temperature $T_1$ and $T_2$, respectively. The information flow in such a system is defined…

Statistical Mechanics · Physics 2015-05-13 Armen E. Allahverdyan , Dominik Janzing , Guenter Mahler

A central concern across the natural sciences is a quantitative understanding of the mechanism governing rare transitions between two metastable states. Recent research has uncovered a fundamental equality between the time-reversal…

Statistical Mechanics · Physics 2024-12-30 Miranda D. Louwerse , David A. Sivak

We present a measurement noise reduction scheme based on information flow of a chaotic system. This scheme operates on conditions of chaoticity and well-defined noise level, not depending on other detailed characteristics of noise. Starting…

Chaotic Dynamics · Physics 2007-05-23 Seung Ki Baek

Transfer Entropy and Directed Information are information-theoretic measures of the directional dependency between stochastic processes. Following the definitions of Schreiber and Massey in discrete time, we define and evaluate these…

Probability · Mathematics 2016-04-08 Nigel J. Newton

Information Theory concepts and methodologies conform the background of how communication systems are studied and understood. They are mainly focused on the source-channel-receiver problem and on the asymptotic limits of accuracy and…

Adaptation and Self-Organizing Systems · Physics 2017-05-16 Nicolás Rubido , Celso Grebogi , Murilo S. Baptista

The studies of the dynamics of topical dataflow of new information in the framework of a logistic model were suggested. The condition of topic balance, when the number of publications on all topics is proportional to the information space…

Information Theory · Computer Science 2008-12-18 D. V. Lande , S. M. Braichevskii
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