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We investigate the crystallization of a single, flexible homopolymer chain using transition path sampling (TPS). The chain consists of N identical spherical monomers evolved according to Langevin dynamics. While neighboring monomers are…
The `mechanization' is a procedure of replacing a scalar field in 1+1 dimensions with a piece-wise linear function, i.e. a finite graph consisting of $N$ joints (vertices) and straight segments (edges). As a result, the field theory is…
We consider a discrete time particle model for kinetic transport on the two dimensional integer lattice. The particle can move due to advection in the $x$-direction and due to dispersion. This happens when the particle is free, but it can…
The turning distance is a well-studied metric for measuring the similarity between two polygons. This metric is constructed by taking an $L^p$ distance between step functions which track each shape's tangent angle of a path tracing its…
A key result in computational 3-manifold topology is that any two triangulations of the same 3-manifold are connected by a finite sequence of bistellar flips, also known as Pachner moves. One limitation of this result is that little is…
We show that a minimal triangulation of the associahedron (Stasheff polytope) of dimension n is made of (n+1)^{n-1} simplices. We construct a natural bijection with the set of parking functions from a new interpretation of parking functions…
We study the geometry of interacting knotted solitons. The interaction is local and advances either as a three-body or as a four-body process, depending on the relative orientation and a degeneracy of the solitons involved. The splitting…
There is a natural generalization of domino tilings to tilings of a polygon by hexagons, or, dually, configurations of oriented curves that meet in triples. We show exactly when two such tilings can be connected by a series of moves…
Let S be an nXn real symmetric matrix with spectral decomposition S=Q^T Lambda Q, where Q is an orthogonal matrix and Lambda is diagonal with simple spectrum {lambda_1,..., lambda_n}. Also let O_S e R_S be the orbits by conjugation of S by,…
Single--photon which is initially uncorrelated with atom, will evolve to be entangled with the atom on their continuous kinetic variables in the process of resonant scattering. We find the relations between the entanglement and their…
A particle subject to successive, random displacements is said to execute a random walk (in position or some other coordinate). The mathematical properties of random walks have been very thoroughly investigated, and the model is used in…
We study polygon spaces arising from planar configurations of necklaces with some of the beads fixed and some of the beads sliding freely. These spaces include configuration spaces of flexible polygons and some other natural polygon spaces.…
We introduce a graph structure on Euclidean polytopes. The vertices of this graph are the $d$-dimensional polytopes contained in $\mathbb{R}^d$ and its edges connect any two polytopes that can be obtained from one another by either…
This paper studies the configuration space of all possible positions of a linkage in R^n. For example, it shows that for every compact algebraic set, there is a linkage whose configuration space is analytically isomorphic to a finite number…
A geometry of two sets (GTS) is given on manifolds $\mathfrak{M}$ and $\mathfrak{N}$ by a metric (two-point) function $f:\mathfrak{M\times N}\to R$. Its phenomenological symmetry (PS) means that for some numbers of points from each manifold…
We study the dynamics of the non-classical correlations for few atom systems in the presence of strong interactions for a number of recently developed adiabatic state preparation protocols. We show that entanglement can be created in a…
It is well known that a constant O(n,n,Z) transformation can relate different string backgrounds with n commuting isometries that have very different geometric and topological properties. Here we construct discrete families of (flux)…
We show that the pivoting process associated with one line and $n$ points in $r$-dimensional space may need $\Omega(\log^r n)$ steps in expectation as $n \to \infty$. The only cases for which the bound was known previously were for $r \le…
When two populations of "particles" move in opposite directions, like oppositely charged colloids under an electric field or intersecting flows of pedestrians, they can move collectively, forming lanes along their direction of motion. The…
We extend to arbitrary finite $n$ the notion of immobilization of a convex body $O$ in $R^n$ by a finite set of points $P$ in the boundary of $O$. Because of its importance for this problem, necessary and sufficient conditions are found for…