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The complexity of an ecological community can be distilled into a network, where diverse interactions connect species in a web of dependencies. Species interact not only with each other but indirectly through environmental effects, however…

Populations and Evolution · Quantitative Biology 2020-09-09 Justin D. Yeakel , Mathias M. Pires , Marcus A. M. de Aguiar , James L. O'Donnell , Paulo R. Guimarães , Dominique Gravel , Thilo Gross

We investigate the population dynamics in generalized Rock-Paper-Scissors models with an arbitrary number of species $N$. We show, for the first time, that spiral patterns with $N$-arms may develop both for odd and even $N$, in particular…

Biological Physics · Physics 2012-10-16 P. P. Avelino , D. Bazeia , L. Losano , J. Menezes , B. F. Oliveira

Natural microbial populations often have complex spatial structures. This can impact their evolution, in particular the ability of mutants to take over. While mutant fixation probabilities are known to be unaffected by sufficiently…

Populations and Evolution · Quantitative Biology 2024-12-30 Alia Abbara , Anne-Florence Bitbol

The Rock-Paper-Scissors (RPS) game and its generalizations with ${\cal S}>3$ species are well studied models for cyclically interacting populations. Four is, however, the minimum number of species that, by allowing other interactions beyond…

Populations and Evolution · Quantitative Biology 2014-03-28 Charlotte Rulquin , Jeferson J. Arenzon

As a result of climate change, many populations have to modify their range to follow the suitable areas - their "climate envelope" - often risking extinction. During this migration process, they may face absolute boundaries to dispersal,…

Analysis of PDEs · Mathematics 2009-07-07 Lionel Roques , Alain Roques , Henri Berestycki , André Kretzschmar

We investigate the problem of the predominance and survival of "weak" species in the context of the simplest generalization of the spatial stochastic rock-paper-scissors model to four species by considering models in which one, two, or…

Populations and Evolution · Quantitative Biology 2020-07-01 P. P. Avelino , B. F. de Oliveira , R. S. Trintin

Ecology and evolution are inherently linked, and studying a mathematical model that considers both holds promise of insightful discoveries related to the dynamics of cooperation. In the present article, we use the prisoner's dilemma (PD)…

Populations and Evolution · Quantitative Biology 2021-08-10 Sayantan Nag Chowdhury , Srilena Kundu , Jeet Banerjee , Matjaž Perc , Dibakar Ghosh

Ecologists have long investigated how demographic and movement parameters determine the spatial distribution and critical habitat size of a population. However, most models oversimplify movement behavior, neglecting how landscape…

Populations and Evolution · Quantitative Biology 2024-03-11 Vivian Dornelas , Pablo de Castro , Justin M. Calabrese , William F. Fagan , Ricardo Martinez-Garcia

Rapidly mutating pathogens may be able to persist in the population and reach an endemic equilibrium by escaping hosts' acquired immunity. For such diseases, multiple biological, environmental and population-level mechanisms determine the…

Physics and Society · Physics 2019-02-07 Alberto Aleta , Andreia N. S. Hisi , Sandro Meloni , Chiara Poletto , Vittoria Colizza , Yamir Moreno

The interdependence between an individual strategy decision and the resulting change of environmental state is often a subtle process. Feedback-evolving games have been a prevalent framework for studying such feedback in well-mixed…

Populations and Evolution · Quantitative Biology 2025-03-05 Qiushuang Wang , Xiaojie Chen , Attila Szolnoki

We investigate the phenomenology emerging from a 2-species dynamics under the scenario of a quasi-neutral competition within a metapopulation framework. We employ stochastic and deterministic approaches, namely spatially-constrained…

Populations and Evolution · Quantitative Biology 2021-02-05 Marcelo A. Pires , Nuno Crokidakis , Silvio M. Duarte Queirós

Many socio-economic and biological processes can be modeled as systems of interacting individuals. The behaviour of such systems can be often described within game-theoretic models. In these lecture notes, we introduce fundamental concepts…

Populations and Evolution · Quantitative Biology 2013-05-30 Jacek Miekisz

Predicting species persistence within ecological communities is a fundamental challenge for both empirical and theoretical ecology. Existing methods span from mechanistic models, whose parameters are difficult to estimate from data, to…

Populations and Evolution · Quantitative Biology 2026-04-30 Davide Bernardi , Giorgio Nicoletti , Prajwal Padmanabha , Samir Suweis , Sandro Azaele , Simon A. Levin , Andrea Rinaldo , Amos Maritan

We investigate a six-species class of May-Leonard models leading to formation two types of competing spatial domains, each one inhabited by three-species with their own internal cyclic rock-paper-scissors dynamics. We study the resulting…

Adaptation and Self-Organizing Systems · Physics 2019-08-07 P. P. Avelino , J. Menezes , B. F. de Oliveira , T. A. Pereira

Microbial populations generally evolve in volatile environments, under conditions fluctuating between harsh and mild, e.g. as the result of sudden changes in toxin concentration or nutrient abundance. Environmental variability thus shapes…

Populations and Evolution · Quantitative Biology 2023-12-07 Matthew Asker , Lluís Hernández-Navarro , Alastair M. Rucklidge , Mauro Mobilia

The self-organization of microbial ecosystems involves a large variety of mechanisms, ranging from biochemical signaling to population dynamics. Among these, the role of motility regulation has been little studied, despite the importance of…

Statistical Mechanics · Physics 2025-03-18 Alberto Dinelli , Ada Altieri , Julien Tailleur

Noise and spatial degrees of freedom characterize most ecosystems. Some aspects of their influence on the coevolution of populations with cyclic interspecies competition have been demonstrated in recent experiments [e.g. B. Kerr et al.,…

Populations and Evolution · Quantitative Biology 2007-12-08 Tobias Reichenbach , Mauro Mobilia , Erwin Frey

Migration between different habitats is ubiquitous among biological populations. In this Letter, we study a simple quasispecies model for evolution in two different habitats, with different fitness landscapes, coupled through one-way…

Populations and Evolution · Quantitative Biology 2010-12-23 Bartlomiej Waclaw , Rosalind J. Allen , Martin R. Evans

We study a five-species cyclic system wherein individuals of one species strategically adapt their movements to enhance their performance in the spatial rock-paper-scissors game. Environmental cues enable the awareness of the presence of…

Populations and Evolution · Quantitative Biology 2024-06-05 R. Barbalho , S. Rodrigues , M. Tenorio , J. Menezes

Microbial ecosystems are commonly modeled by fixed interactions between species in steady exponential growth states. However, microbes often modify their environments so strongly that they are forced out of the exponential state into…

Populations and Evolution · Quantitative Biology 2024-01-08 Avaneesh V. Narla , Terence Hwa , Arvind Murugan
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