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An occurrence of a repeated substring $u$ in a string $S$ is called a net occurrence if extending the occurrence to the left or to the right decreases the number of occurrences to 1. The net frequency (NF) of a repeated substring $u$ in a…

Data Structures and Algorithms · Computer Science 2026-01-01 Shunsuke Inenaga

Let $S$ be a string of length $n$ with characters from an alphabet of size $\sigma$. The \emph{subsequence automaton} of $S$ (often called the \emph{directed acyclic subsequence graph}) is the minimal deterministic finite automaton…

Formal Languages and Automata Theory · Computer Science 2016-01-20 Philip Bille , Inge Li Gørtz , Frederik Rye Skjoldjensen

The minimum average number of bits need to describe a random variable is its entropy, assuming knowledge of the underlying statistics On the other hand, universal compression supposes that the distribution of the random variable, while…

Information Theory · Computer Science 2014-04-02 Maryam Hosseini , Narayana Santhanam

We consider the $Parameterized$ $Pattern$ $Matching$ problem, where a pattern $P$ matches some location in a text $\mathsf{T}$ iff there is a one-to-one correspondence between the alphabet symbols of the pattern to those of the text. More…

Data Structures and Algorithms · Computer Science 2016-04-07 Arnab Ganguly , Rahul Shah , Sharma V. Thankachan

We consider the problem of computing a $(1+\epsilon)$-approximation of the Hamming distance between a pattern of length $n$ and successive substrings of a stream. We first look at the one-way randomised communication complexity of this…

Data Structures and Algorithms · Computer Science 2016-02-24 Raphael Clifford , Tatiana Starikovskaya

Given $m$ documents of total length $n$, we consider the problem of finding a longest string common to at least $d \geq 2$ of the documents. This problem is known as the \emph{longest common substring (LCS) problem} and has a classic $O(n)$…

Data Structures and Algorithms · Computer Science 2014-07-03 Tomasz Kociumaka , Tatiana Starikovskaya , Hjalte Wedel Vildhøj

We cast encryption via classical block ciphers in terms of operator spreading in a dual space of Pauli strings, a formulation which allows us to characterize classical ciphers by using tools well known in the analysis of quantum many-body…

Cryptography and Security · Computer Science 2022-03-08 Claudio Chamon , Eduardo R. Mucciolo , Andrei E. Ruckenstein

Quantum cryptography is a rapidly-developing area which leverages quantum information to accomplish classically-impossible tasks. In many of these protocols, quantum states are used as long-term cryptographic keys. Typically, this is to…

Quantum Physics · Physics 2025-11-07 Omri Shmueli , Mark Zhandry

We present an explicit and efficient algebraic construction of capacity-achieving list decodable codes with both constant alphabet and constant list sizes. More specifically, for any $R \in (0,1)$ and $\epsilon>0$, we give an algebraic…

Computational Complexity · Computer Science 2021-06-11 Zeyu Guo , Noga Ron-Zewi

Much research in stringology focuses on structures that can, in a way, ``grasp'' repeats (substrings that occur multiple times) as, for example, the so-called runs, a.k.a. maximal repetitions, compactly describe all tandem repeats. In this…

Data Structures and Algorithms · Computer Science 2024-10-02 Dmitry Kosolobov

Compression is beneficial because it helps detract resource usage. It reduces data storage space as well as transmission traffic and improves web pages loading. Run-length coding (RLC) is a lossless data compression algorithm. Data are…

Data Structures and Algorithms · Computer Science 2016-11-30 Kaveh Geyratmand Haghighi , Mirkamal Mirnia , Ahmad Habibizad Navin

Let $\mathcal{D}$ be a collection of $D$ documents, which are strings over an alphabet of size $\sigma$, of total length $n$. We describe a data structure that uses linear space and and reports $k$ most relevant documents that contain a…

Data Structures and Algorithms · Computer Science 2013-08-02 Gonzalo Navarro , Yakov Nekrich

Each positive increasing integer sequence $\{a_n\}_{n\geq 0}$ can serve as a numeration system to represent each non-negative integer by means of suitable coefficient strings. We analyse the case of $k$-generalized Fibonacci sequences…

Combinatorics · Mathematics 2022-04-22 Elena Barcucci , Antonio Bernini , Renzo Pinzani

Given a pattern $p = s_1x_1s_2x_2\cdots s_{r-1}x_{r-1}s_r$ such that $x_1,x_2,\ldots,x_{r-1}\in\{x,\overset{{}_{\leftarrow}}{x}\}$, where $x$ is a variable and $\overset{{}_{\leftarrow}}{x}$ its reversal, and $s_1,s_2,\ldots,s_r$ are…

Data Structures and Algorithms · Computer Science 2017-07-19 Dmitry Kosolobov , Florin Manea , Dirk Nowotka

We consider the Abelian longest common factor problem in two scenarios: when input strings are uncompressed and are of size $n$, and when the input strings are run-length encoded and their compressed representations have size at most $m$.…

Data Structures and Algorithms · Computer Science 2018-04-19 Szymon Grabowski , Tomasz Kociumaka , Jakub Radoszewski

Deterministic finite automata are one of the simplest and most practical models of computation studied in automata theory. Their conceptual extension is the non-deterministic finite automata which also have plenty of applications. In this…

Data Structures and Algorithms · Computer Science 2019-07-24 Sankardeep Chakraborty , Roberto Grossi , Kunihiko Sadakane , Srinivasa Rao Satti

Various grammar compression algorithms have been proposed in the last decade. A grammar compression is a restricted CFG deriving the string deterministically. An efficient grammar compression develops a smaller CFG by finding duplicated…

Data Structures and Algorithms · Computer Science 2016-09-01 Shouhei Fukunaga , Yoshimasa Takabatake , I Tomohiro , Hiroshi Sakamoto

In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…

Data Structures and Algorithms · Computer Science 2014-02-11 Gary Benson , Avivit Levy , Riva Shalom

The Shannon Noiseless coding theorem (the data-compression principle) asserts that for an information source with an alphabet $\mathcal X=\{0,\ldots ,\ell -1\}$ and an asymptotic equipartition property, one can reduce the number of stored…

Information Theory · Computer Science 2016-04-26 Yuri Suhov , Izabella Stuhl

Given a set $S$ of $n$ (distinct) keys from key space $[U]$, each associated with a value from $\Sigma$, the \emph{static dictionary} problem asks to preprocess these (key, value) pairs into a data structure, supporting value-retrieval…

Data Structures and Algorithms · Computer Science 2020-09-01 Huacheng Yu