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We introduce a framework for adsorption of a single polymer in which the topology of the polymer is quenched before adsorption, in contrast to more standard adsorption models having annealed topology. Our "topology" refers either to the…

Mathematical Physics · Physics 2022-11-09 Neal Madras

Based on a newly developed contact-density chain-growth algorithm, we have simulated a nongrafted peptide in the vicinity of different attractive substrates. We analyzed the specificity of the peptide adsorption by focussing on the…

Soft Condensed Matter · Physics 2007-10-24 Michael Bachmann , Wolfhard Janke

We have performed extensive simulations of random sequential adsorption and diffusion of $k$-mers, up to $k=5$ in two dimensions with particular attention to the case $k=2$. We focus on the behavior of the coverage and of vacancy dynamics…

Statistical Mechanics · Physics 2009-11-07 C. Fusco , P. Gallo , A. Petri , M. Rovere

In random sequential adsorption (RSA), objects are deposited randomly, irreversibly, and sequentially; attempts leading to an overlap with previously deposited objects are discarded. The process continues until the system reaches a jammed…

Statistical Mechanics · Physics 2020-12-04 P. L. Krapivsky

The model of competition between densities of two different species, called predator and prey, is studied on a one dimensional periodic lattice, where each site can be in one of the four states say, empty, or occupied by a single predator,…

Statistical Mechanics · Physics 2011-06-02 Rakesh Chatterjee , P. K. Mohanty , Abhik Basu

We present a model of one-dimensional irreversible adsorption in which particles once adsorbed immediately shrink to a smaller size or expand to a larger size. Exact solutions for the fill factor and the particle number variance as a…

Disordered Systems and Neural Networks · Physics 2007-05-23 Arsen V. Subashiev , Serge Luryi

We investigate both analytically and by numerical simulation the kinetics of a microscopic model of hard rods adsorbing on a linear substrate, a model which is relevant for compaction of granular materials. The computer simulations use an…

Statistical Mechanics · Physics 2009-10-31 J. Talbot , G. Tarjus , P. Viot

Adsorption of dimers is modelled using random sequential adsorption algorithm. The interaction between molecules is given by screened electrostatic potential. The paper focuses on the properties of adsorbed monolayers as well as the…

Materials Science · Physics 2013-05-14 Michal Ciesla , Jakub Barbasz

We study the interplay between repulsive interaction and an almost staggered on-site potential in one-dimension. Specifically, we address the Harper model for spinless fermions with nearest-neighbor repulsion, close to half-filling. Using…

Mesoscale and Nanoscale Physics · Physics 2016-12-14 Yaacov E. Kraus , Oded Zilberberg , Richard Berkovits

Lattice model of directed self avoiding walk is used to investigate adsorption properties of a semiflexible sequential copolymer chain on an impenetrable curved surface on a hexagonal lattice in two dimensions. Walks of the copolymer chains…

Statistical Mechanics · Physics 2010-06-02 Pramod Kumar Mishra

This article develops a general-purpose adaptive sampler that approximates the target density by a mixture of multivariate t densities. The adaptive sampler is based on reversible proposal distributions each of which has the mixture of…

Methodology · Statistics 2013-08-22 Minh-Ngoc Tran , Michael K. Pitt , Robert Kohn

We study the adsorption of polymer chains on a fluctuating surface. Physical examples are provided by polymer adsorption at the rough interface between two non-miscible liquids, or on a membrane. In a mean-field approach, we find that the…

Condensed Matter · Physics 2009-10-22 T. Garel , Mehran Kardar , H. Orland

Systems driven far from equilibrium may exhibit anomalous density fluctuations: active matter with orientational order display giant density fluctuations at large scale, while systems of interacting particles close to an absorbing phase…

Statistical Mechanics · Physics 2026-03-23 Sara Dal Cengio , Romain Mari , Eric Bertin

We study the steady state of a stochastic particle system on a two-dimensional lattice, with particle influx, diffusion and desorption, and the formation of a dimer when particles meet. Surface processes are thermally activated, with…

Statistical Mechanics · Physics 2015-05-30 A. Wolff , I. Lohmar , J. Krug , O. Biham

We review recent progress in analysing wave scattering in systems with both intrinsic chaos and/or disorder and internal losses, when the scattering matrix is no longer unitary. By mapping the problem onto a nonlinear supersymmetric…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 Y. V. Fyodorov , D. V. Savin , H. -J. Sommers

Random sequential adsorption with diffusional relaxation, of two by two square objects on the two-dimensional square lattice is studied by Monte Carlo computer simulation. Asymptotically for large lattice sizes, diffusional relaxation…

Condensed Matter · Physics 2010-10-12 Jian-Sheng Wang , Peter Nielaba , Vladimir Privman

The process of protein synthesis in biological systems resembles a one dimensional driven lattice gas in which the particles have spatial extent, covering more than one lattice site. We expand the well studied Totally Asymmetric Exclusion…

Statistical Mechanics · Physics 2009-11-10 Leah B. Shaw , R. K. P. Zia , Kelvin H. Lee

The irreversible adsorption of polymers to a two-dimensional solid surface is studied. An operator formalism is introduced for chemisorption from a polydisperse solution of polymers which transforms the analysis of the adsorption process to…

Chemical Physics · Physics 2009-11-13 Radek Erban , Jonathan Chapman

In the self-assembly process which drives the formation of cellular membranes, micelles, and capsids, a collection of separated subunits spontaneously binds together to form functional and more ordered structures. In this work, we study the…

Biological Physics · Physics 2021-05-04 Mobolaji Williams

Physisorption or chemisorption from dilute polymer solutions often entails irreversible polymer-surface bonding. We present a theory of the non-equilibrium layers which result. While the density profile and loop distribution are the same as…

Soft Condensed Matter · Physics 2009-11-07 Ben O'Shaughnessy , Dimitrios Vavylonis