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Quantification of microscopy time-series of in vitro reconstituted motor driven microtubule (MT) transport in 'gliding assays' is typically performed using computational object tracking tools. However, these are limited to non-intersecting…

Quantitative Methods · Quantitative Biology 2025-08-15 Dhruv Khatri , Shivani A. Yadav , Chaitanya A. Athale

We propose a new approach to graph compression by appeal to optimal transport. The transport problem is seeded with prior information about node importance, attributes, and edges in the graph. The transport formulation can be setup for…

Machine Learning · Computer Science 2019-05-30 Vikas K. Garg , Tommi Jaakkola

Let $P$ be a path graph of $n$ vertices embedded in a metric space. We consider the problem of adding a new edge to $P$ so that the radius of the resulting graph is minimized, where any center is constrained to be one of the vertices of…

Data Structures and Algorithms · Computer Science 2020-06-26 Haitao Wang , Yiming Zhao

We study several natural instances of the geometric hitting set problem for input consisting of sets of line segments (and rays, lines) having a small number of distinct slopes. These problems model path monitoring (e.g., on road networks)…

Computational Geometry · Computer Science 2016-12-20 Sándor P. Fekete , Kan Huang , Joseph S. B. Mitchell , Ojas Parekh , Cynthia A. Phillips

Given a directed graph of nodes and edges connecting them, a common problem is to find the shortest path between any two nodes. Here we show that the shortest path distances can be found by a simple matrix inversion: If the edges are given…

Data Structures and Algorithms · Computer Science 2024-07-25 Zeyu Jing , Markus Meister

We study the computational complexity of routing multiple objects through a network in such a way that only few collisions occur: Given a graph $G$ with two distinct terminal vertices and two positive integers $p$ and $k$, the question is…

Computational Complexity · Computer Science 2017-05-11 Till Fluschnik , Marco Morik , Manuel Sorge

The determination of the computational complexity of multi-agent pathfinding on directed graphs has been an open problem for many years. For undirected graphs, solvability can be decided in polynomial time, as has been shown already in the…

Artificial Intelligence · Computer Science 2022-09-20 Bernhard Nebel

We consider the problem of tracking one solution path defined by a polynomial homotopy on a parallel shared memory computer. Our robust path tracker applies Newton's method on power series to locate the closest singular parameter value. On…

Numerical Analysis · Mathematics 2020-07-31 Simon Telen , Marc Van Barel , Jan Verschelde

The semiconductor diode, which acts as an electrical rectifier and allows unidirectional electronic transports, is the key to information processing in integrated circuits. Analogously, an optical rectifier (or diode) working at specific…

Quantum Physics · Physics 2014-09-05 H. Z. Shen , Y. H. Zhou , X. X. Yi

Recent differentiable rendering techniques have become key tools to tackle many inverse problems in graphics and vision. Existing models, however, assume steady-state light transport, i.e., infinite speed of light. While this is a safe…

Graphics · Computer Science 2022-06-14 Shinyoung Yi , Donggun Kim , Kiseok Choi , Adrian Jarabo , Diego Gutierrez , Min H. Kim

Graph coloring is a problem with varied applications in industry and science such as scheduling, resource allocation, and circuit design. The purpose of this paper is to establish if a new gradient based iterative solver framework known as…

Machine Learning · Computer Science 2024-04-24 Vivek Chaudhary

Determining the crossing numbers of Cartesian products of small graphs with arbitrarily large paths has been an ongoing topic of research since the 1970s. Doing so requires the establishment of coincident upper and lower bounds; the former…

Combinatorics · Mathematics 2024-09-12 Zayed Asiri , Ryan Burdett , Markus Chimani , Michael Haythorpe , Alex Newcombe , Mirko H. Wagner

We propose an implementation of a quantum computer to solve Deutsch's problem, which requires exponential time on a classical computer but only linear time with quantum parallelism. By using a dual-rail qubit representation as a simple form…

Quantum Physics · Physics 2009-10-28 I. L. Chuang , Y. Yamamoto

We study the problem of calculating noncommutative distances on graphs, using techniques from linear algebra, specifically, Birkhoff-James orthogonality. A complete characterization of the solutions is obtained in the case when the…

Operator Algebras · Mathematics 2024-09-09 Pierre Clare , Chi-Kwong Li , Edward Poon , Eric Swartz

An $r$-simple $k$-path is a {path} in the graph of length $k$ that passes through each vertex at most $r$ times. The $r$-SIMPLE $k$-PATH problem, given a graph $G$ as input, asks whether there exists an $r$-simple $k$-path in $G$. We first…

Data Structures and Algorithms · Computer Science 2014-01-23 Hasan Abasi , Nader H. Bshouty , Ariel Gabizon , Elad Haramaty

The high computational expense of simulating light through ray-tracing in large, sparsely instrumented particle detectors such as IceCube and Antares is a critical outstanding problem in particle physics. When the detector is sparsely…

High Energy Physics - Experiment · Physics 2018-11-13 Gabriel H. Collin

A {\em parametric weighted graph} is a graph whose edges are labeled with continuous real functions of a single common variable. For any instantiation of the variable, one obtains a standard edge-weighted graph. Parametric weighted graph…

Computational Complexity · Computer Science 2010-02-03 Eldar Fischer , Oded Lachish , Raphael Yuster

We systematically present a new approach for studying the coupled linear transport of holographic systems. In this approach, the set of equations for the linear perturbations can be reduced to a first-order nonlinear ordinary differential…

High Energy Physics - Theory · Physics 2017-08-30 Yu Tian , Xian-Hui Ge , Shao-Feng Wu

Hamiltonian light-front quantum field theory constitutes a framework for the non-perturbative solution of invariant masses and correlated parton amplitudes of self-bound systems. By choosing light-front gauge and adopting a basis function…

Nuclear Theory · Physics 2009-09-29 J. P. Vary , H. Honkanen , Jun Li , P. Maris , S. J. Brodsky , P. Sternberg , E. G. Ng , C. Yang

Graph isomorphism is an important computer science problem. The problem for the general case is unknown to be in polynomial time. The base algorithm for the general case works in quasi-polynomial time. The solutions in polynomial time for…

Discrete Mathematics · Computer Science 2017-11-23 Vaibhav Amit Patel