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We suggest to simulate evolution of complex organisms constrained by the sole requirement of robustness in their expression patterns. This scenario is illustrated by evolving discrete logical networks with epigenetic properties. Evidence…

Statistical Mechanics · Physics 2007-05-23 Stefan Bornholdt , Kim Sneppen

Developmental bias plays a major role in phenotypic evolution. Some researchers have argued that phenotypes, regulated by development, can only evolve along restricted trajectory under certain scenarios, such as the case for mammalian molar…

Populations and Evolution · Quantitative Biology 2023-11-15 Yue Zhang

In biology, the evolution of increasingly cooperative groups has shaped the history of life. Genes collaborate in the control of cells; cells efficiently divide tasks to produce cohesive multicellular individuals; individual members of…

Populations and Evolution · Quantitative Biology 2011-12-15 Steven A. Frank

Weak selection, which means a phenotype is slightly advantageous over another, is an important limiting case in evolutionary biology. Recently it has been introduced into evolutionary game theory. In evolutionary game dynamics, the…

Populations and Evolution · Quantitative Biology 2010-10-15 Bin Wu , Philipp M. Altrock , Long Wang , Arne Traulsen

At what level does selective pressure effectively act? When considering the reproductive dynamics of interacting and mutating agents, it has long been debated whether selection is better understood by focusing on the individual or if…

Populations and Evolution · Quantitative Biology 2023-11-02 Hardik Rajpal , Clem von Stengel , Pedro A. M. Mediano , Fernando E. Rosas , Eduardo Viegas , Pablo A. Marquet , Henrik J. Jensen

The central goal of a dynamical theory of evolution is to abstract the mean evolutionary trajectory in the trait space by considering ecological processes at the level of the individual. In this work, we develop such a theory for a new…

Populations and Evolution · Quantitative Biology 2020-03-25 Vaibhav Madhok

Ecological systems are emergent features of ecological and adaptive dynamics of a community of interacting species. By natural selection through the abiotic environment and by co-adaptation within the community, species evolve, thereby…

Populations and Evolution · Quantitative Biology 2018-07-03 Katharina Brinck , Henrik Jeldtoft Jensen

Decades of scientific inquiry have sought to understand how evolution fosters cooperation, a concept seemingly at odds with the belief that evolution should produce rational, self-interested individuals. Most previous work has focused on…

Populations and Evolution · Quantitative Biology 2025-12-16 Mohammad Salahshour , Iain D. Couzin

How cooperation emerges in human societies is still a puzzle. Evolutionary game theory has been the standard framework to address this issue. In most models, every individual plays with all others, and then reproduce and die according to…

Populations and Evolution · Quantitative Biology 2007-05-23 Carlos P. Roca , Jose A. Cuesta , Angel Sanchez

The classic Trivers-Willard hypothesis suggested the existence of means or conditions able to influence or control the sex of the offspring. Here I propose that mechanisms for the alteration of the gender of the offspring could possibly be…

Computers and Society · Computer Science 2018-02-14 De Florio Vincenzo

Evolution is the principal theoretical framework in Pacific Island archaeology. Progressive cultural evolutionary stages, particularly the chiefdom, provided the earliest framework. These ideas were increasingly linked to islands as…

Populations and Evolution · Quantitative Biology 2019-06-18 Ethan Cochrane

How do shared conventions emerge in complex decentralized social systems? This question engages fields as diverse as linguistics, sociology and cognitive science. Previous empirical attempts to solve this puzzle all presuppose that formal…

Physics and Society · Physics 2015-03-24 Damon Centola , Andrea Baronchelli

Evolutionary game dynamics in structured populations are strongly affected by updating rules. Previous studies usually focus on imitation-based rules, which rely on payoff information of social peers. Recent behavioral experiments suggest…

Populations and Evolution · Quantitative Biology 2018-10-02 Lei Zhou , Bin Wu , Jinming Du , Long Wang

Evolutionary game theory has been successfully used to investigate the dynamics of systems, in which many entities have competitive interactions. From a physics point of view, it is interesting to study conditions under which a coordination…

Physics and Society · Physics 2015-05-14 Dirk Helbing , Anders Johansson

Rapid advance of experimental techniques provides an unprecedented in-depth view into complex developmental processes. Still, little is known on how the complexity of multicellular organisms evolved by elaborating developmental programs and…

Molecular Networks · Quantitative Biology 2021-07-16 Somya Mani , Tsvi Tlusty

The most common assumption in evolutionary game theory is that players should adopt a strategy that warrants the highest payoff. However, recent studies indicate that the spatial selection for cooperation is enhanced if an appropriate…

Physics and Society · Physics 2016-05-18 Attila Szolnoki , Matjaz Perc

We assume that the natural intelligence (human, particularly) is equivalent to a large inferring structure, which took shape in the last 400/500 million years. Then two hypotheses, about this structure and its development, are put forward…

Populations and Evolution · Quantitative Biology 2007-05-23 Claudio Parmeggiani

Dynamics with choice is a generalization of discrete-time dynamics where instead of the same evolution operator at every time step there is a choice of operators to transform the current state of the system. This notion is new and…

Dynamical Systems · Mathematics 2008-07-03 Lev Kapitanski , Sanja Živanović

A common assumption in evolutionary thought is that adaptation drives an increase in biological complexity. However, the rules governing evolution of complexity appear more nuanced. Evolution is deeply connected to learning, where…

Populations and Evolution · Quantitative Biology 2025-08-06 Hagai Rappeport , Mor Nitzan

The concept of hierarchy in complex systems is tightly linked to co-evolutionary processes. We propose here to explore it in the case of the co-evolution between transportation networks and territories. More precisely, we extend a…

Physics and Society · Physics 2020-02-03 Juste Raimbault