Related papers: Generating trees for permutations avoiding general…
This paper introduces the concept of a generating set for stochastic matrices -- a subset of matrices whose repeated composition generates the entire set. Understanding such generating sets requires specifying the "indivisible elements" and…
We propose a new arithmetic for non-empty rooted unordered trees simply called trees. After discussing tree representation and enumeration, we define the operations of tree addition, multiplication and stretch, prove their properties, and…
Bouttier, Di Francesco and Guitter introduced a method for solving certain classes of algebraic recurrence relations arising the context of embedded trees and map enumeration. The aim of this note is to apply this method to three problems.…
The ongoing explosion of genome sequence data is transforming how we reconstruct and understand the histories of biological systems. Across biological scales, from individual cells to populations and species, trees-based models provide a…
When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…
This work addresses an enumeration problem on weighted bi-colored plane trees with prescribed vertex data, with all vertices labeled distinctly. We give a bijection proof of the enumeration formula originally due to Kochetkov, hence…
A $B$-tree is a type of search tree where every node (except possibly for the root) contains between $m$ and $2m$ keys for some positive integer $m$, and all leaves have the same distance to the root. We study sequences of $B$-trees that…
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
We study the nature of the generating series of some models of walks with small steps in the three quarter plane. More precisely, we restrict ourselves to the situation where the group is infinite, the kernel has genus one, and the step set…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…
Text generation from AMR requires mapping a semantic graph to a string that it annotates. Transformer-based graph encoders, however, poorly capture vertex dependencies that may benefit sequence prediction. To impose order on an encoder, we…
We determine the structure of permutations avoiding the patterns 4213 and 2143. Each such permutation consists of the skew sum of a sequence of plane trees, together with an increasing sequence of points above and an increasing sequence of…
We study several enumeration problems connected to linear trees, a broad class which includes stars, paths, generalized stars, and caterpillars. We provide generating functions for counting the number of linear trees on $n$ vertices,…
Deep generative models are able to suggest new organic molecules by generating strings, trees, and graphs representing their structure. While such models allow one to generate molecules with desirable properties, they give no guarantees…
We develop a new, powerful method for counting elements in a multiset. As a first application, we use this algorithm to study the number of occurrences of patterns in a permutation. For patterns of length 3 there are two Wilf classes, and…
Learning distributed sentence representations remains an interesting problem in the field of Natural Language Processing (NLP). We want to learn a model that approximates the conditional latent space over the representations of a logical…
We consider the problem of uniformly generating a spanning tree, of a connected undirected graph. This process is useful to compute statistics, namely for phylogenetic trees. We describe a Markov chain for producing these trees. For cycle…
Recently Albert and Bousquet-M\'elou obtained the solution to the long-standing problem of the enumeration of permutations sortable by two stacks in parallel (2sip). Their solution was expressed in terms of functional equations. E.P. and…
We construct a generative network for Monte-Carlo sampling in lattice field theories and beyond, for which the learning of layerwise propagation is done and optimised independently on each layer. The architecture uses physics-informed…
We study the problem of generating interesting integer sequences with a combinatorial interpretation. For this we introduce a two-step approach. In the first step, we generate first-order logic sentences which define some combinatorial…