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With the increasing amount of data and use of computation in science, software has become an important component in many different domains. Computing is now being used more often and in more aspects of scientific work including data…

Software Engineering · Computer Science 2013-12-17 David Koop , Juliana Freire , Claudio T. Silva

Selecting a connected subnetwork enriched in individually important vertices is an approach commonly used in many areas of bioinformatics, including analysis of gene expression data, mutations, metabolomic profiles and others. It can be…

Data Structures and Algorithms · Computer Science 2017-02-06 Javlon E. Isomurodov , Alexander A. Loboda , Alexey A. Sergushichev

The problem of finding dense components of a graph is a widely explored area in data analysis, with diverse applications in fields and branches of study including community mining, spam detection, computer security and bioinformatics. This…

Information Retrieval · Computer Science 2021-03-02 B. D. M. De Zoysa , Y. A. M. M. A. Ali , M. D. I. Maduranga , Indika Perera , Saliya Ekanayake , Anil Vullikanti

One of the most important problems of data processing in high energy and nuclear physics is the event reconstruction. Its main part is the track reconstruction procedure which consists in looking for all tracks that elementary particles…

Machine Learning · Computer Science 2019-10-02 Dmitriy Baranov , Sergey Mitsyn , Pavel Goncharov , Gennady Ososkov

Aligning multiple protein structures can yield valuable information about structural similarities among related proteins, as well as provide insight into evolutionary relationships between proteins in a family. We have developed an…

Biomolecules · Quantitative Biology 2019-11-07 Paul Shealy , Homayoun Valafar

The physics goals of the next Large Hadron Collider run include high precision tests of the Standard Model and searches for new physics. These goals require detailed comparison of data with computational models simulating the expected data…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-14 Mikhail Borodin , Kaushik De , Jose Garcia Navarro , Dmitry Golubkov , Alexei Klimentov , Tadashi Maeno , David South , Alexandre Vaniachine

An unconventional solution for finding the location of event creation is presented. It is based on two feed-forward neural networks with fixed architecture, whose parameters are chosen so as to reach a high accuracy. The interaction point…

High Energy Physics - Experiment · Physics 2009-10-31 Gideon Dror , Erez Etzion

In high-energy particle collisions, the reconstruction of secondary vertices from heavy-flavour hadron decays is crucial for identifying and studying jets initiated by $b$- or $c$-quarks. Traditional methods, while effective, require…

High Energy Physics - Experiment · Physics 2024-11-08 Samuel Van Stroud , Nikita Pond , Max Hart , Jackson Barr , Sébastien Rettie , Gabriel Facini , Tim Scanlon

The trigger systems of the LHC detectors play a crucial role in determining the physics capabilities of the experiments. A reduction of several orders of magnitude of the event rate is needed to reach values compatible with the detector…

Instrumentation and Detectors · Physics 2014-09-10 Valentina Gori

With the increasing number of new neural architecture designs and substantial existing neural architectures, it becomes difficult for the researchers to situate their contributions compared with existing neural architectures or establish…

Artificial Intelligence · Computer Science 2024-03-19 Xiaohuan Pei , Yanxi Li , Minjing Dong , Chang Xu

Multiple object tracking is a critical task in autonomous driving. Existing works primarily focus on the heuristic design of neural networks to obtain high accuracy. As tracking accuracy improves, however, neural networks become…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Chensheng Peng , Zhaoyu Zeng , Jinling Gao , Jundong Zhou , Masayoshi Tomizuka , Xinbing Wang , Chenghu Zhou , Nanyang Ye

Software analytics (SA) is frequently proposed as a tool to support practitioners in software engineering (SE) tasks. We have observed that several secondary studies on SA have been published. Some of these studies have overlapping aims and…

Software Engineering · Computer Science 2025-09-18 Muhammad Laiq , Nauman bin Ali , Jürgen Börstler , Emelie Engström

Faced with physical and energy density limitations on clock speed, contemporary microprocessor designers have increasingly turned to on-chip parallelism for performance gains. Algorithms should accordingly be designed with ample amounts of…

Track reconstruction in high track multiplicity environments at current and future high rate particle physics experiments is a big challenge and very time consuming. The search for track seeds and the fitting of track candidates are usually…

Instrumentation and Detectors · Physics 2016-12-21 Andre Schöning

In hadron collider experiments, triggering the detector to store interesting events for offline analysis is a challenge due to the high rates and multiplicities of particles produced. Maintaining high trigger efficiency for the physics we…

High Energy Physics - Experiment · Physics 2019-08-13 Mark S. Neubauer

High-energy physics experiments rely on reconstruction of the trajectories of particles produced at the interaction point. This is a challenging task, especially in the high track multiplicity environment generated by p-p collisions at the…

Computer Vision and Pattern Recognition · Computer Science 2017-12-06 Maxim Borisyak , Andrey Ustyuzhanin , Denis Derkach , Mikhail Belous

As two fundamental problems, graph cuts and graph matching have been investigated over decades, resulting in vast literature in these two topics respectively. However the way of jointly applying and solving graph cuts and matching receives…

Computer Vision and Pattern Recognition · Computer Science 2017-11-28 Tianshu Yu , Junchi Yan , Jieyi Zhao , Baoxin Li

While recent years have witnessed astonishing improvements in visual tracking robustness, the advancements in tracking accuracy have been limited. As the focus has been directed towards the development of powerful classifiers, the problem…

Computer Vision and Pattern Recognition · Computer Science 2019-04-12 Martin Danelljan , Goutam Bhat , Fahad Shahbaz Khan , Michael Felsberg

We describe a duality mapping between STRIPS planning tasks. By exchanging the initial and goal conditions, taking their respective complements, and swapping for every action its precondition and delete list, one obtains for every STRIPS…

Artificial Intelligence · Computer Science 2013-04-04 Martin Suda

In this paper, we study the interplay between acceleration and structure identification for the proximal gradient algorithm. We report and analyze several cases where this interplay has negative effects on the algorithm behavior (iterates…

Optimization and Control · Mathematics 2020-09-01 Gilles Bareilles , Franck Iutzeler
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