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In this work we consider random Boolean networks that provide a general model for genetic regulatory networks. We extend the analysis of James Lynch who was able to proof Kauffman's conjecture that in the ordered phase of random networks,…

Cellular Automata and Lattice Gases · Physics 2007-05-23 Steffen Schober , Martin Bossert

The paper is concerned with the interplay between network structure and traffic dynamics in a communications network, from the viewpoint of end-to-end performance of packet transfer. We use a model of network generation that allows the…

Disordered Systems and Neural Networks · Physics 2016-11-18 David Arrowsmith , Mario di Bernardo , Francesco Sorrentino

Despite the great attention devoted to the study of phase oscillators on complex networks in the last two decades, it remains unclear whether scale-free networks exhibit a nonzero critical coupling strength for the onset of synchronization…

Statistical Mechanics · Physics 2019-10-16 Thomas Peron , Bruno Messias , Angélica S. Mata , Francisco A. Rodrigues , Yamir Moreno

Random graphs have played an instrumental role in modelling real-world networks arising from the internet topology, social networks, or even protein-interaction networks within cells. Percolation, on the other hand, has been the fundamental…

Probability · Mathematics 2018-09-12 Souvik Dhara

Understanding the subgraph distribution in random networks is important for modelling complex systems. In classic Erdos networks, which exhibit a Poissonian degree distribution, the number of appearances of a subgraph G with n nodes and g…

Statistical Mechanics · Physics 2009-11-10 S. Itzkovitz , R. Milo , N. Kashtan , G. Ziv , U. Alon

We describe systems using Kauffman and similar networks. They are directed funct ioning networks consisting of finite number of nodes with finite number of discr ete states evaluated in synchronous mode of discrete time. In this paper we…

Disordered Systems and Neural Networks · Physics 2009-11-13 Andrzej Gecow

We analyze the synchronization transition for a pair of coupled identical Kauffman networks in the chaotic phase. The annealed model for Kauffman networks shows that synchronization appears through a transcritical bifurcation, and provides…

Adaptation and Self-Organizing Systems · Physics 2009-10-31 Luis G. Morelli , Damian H. Zanette

Random Boolean networks, the Kauffman model, are revisited by means of a novel decimation algorithm, which reduces the networks to their dynamical cores. The average size of the removed part, the stable core, grows approximately linearly…

Statistical Mechanics · Physics 2009-11-07 S. Bilke , F. Sjunnesson

We compare phase transition and critical phenomena of bond percolation on Euclidean lattices, nonamenable graphs, and complex networks. On a Euclidean lattice, percolation shows a phase transition between the nonpercolating phase and…

Disordered Systems and Neural Networks · Physics 2014-11-20 Takehisa Hasegawa , Tomoaki Nogawa , Koji Nemoto

We study first- and second-order phase transitions of ferromagnetic lattice models on scale-free networks, with a degree exponent $\gamma$. Using the example of the $q$-state Potts model we derive a general self-consistency relation within…

Statistical Mechanics · Physics 2016-08-16 Ferenc Iglói , Loïc Turban

Random Boolean networks were introduced in 1969 by Kauffman as a model for gene regulation. By combining analytical arguments and efficient numerical simulations, we evaluate the properties of relevant components of critical random Boolean…

Disordered Systems and Neural Networks · Physics 2009-11-11 V. Kaufman , B. Drossel

Random Threshold Networks with sparse, asymmetric connections show complex dynamical behavior similar to Random Boolean Networks, with a transition from ordered to chaotic dynamics at a critical average connectivity $K_c$. In this type of…

Statistical Mechanics · Physics 2009-11-07 Thimo Rohlf , Stefan Bornholdt

We analyse a model of fixed in-degree Random Boolean Networks in which the fraction of input-receiving nodes is controlled by a parameter gamma. We investigate analytically and numerically the dynamics of graphs under a parallel XOR…

Statistical Mechanics · Physics 2009-09-03 L. Ciandrini , C. Maffi , A. Motta , B. Bassetti , M. Cosentino Lagomarsino

In a series of articles published in 1986 Derrida, and his colleagues studied two mean field treatments (the quenched and the annealed) for \textit{NK}-Kauffman Networks. Their main results lead to a phase transition curve $ K_c \, 2 \, p_c…

Cellular Automata and Lattice Gases · Physics 2014-04-15 Federico Zertuche

This paper is concerned with the characterization of the relationship between topology and traffic dynamics. We use a model of network generation that allows the transition from random to scale free networks. Specifically, we consider three…

Networking and Internet Architecture · Computer Science 2007-05-23 David Arrowsmith , Mario di Bernardo , Francesco Sorrentino

We present a renormalization-grouplike method performed in the state space for detecting the dynamical behaviors of large scale-free Boolean networks, especially for the chaotic regime as well as the edge of chaos. Numerical simulations…

Disordered Systems and Neural Networks · Physics 2007-05-23 Wen-Xu Wang , Gang Yan , Jie Ren , Bing-Hong Wang

We study the site-bond percolation on a hierarchical scale-free network, namely, the decorated (2,2)-flower, by using the renormalization group technique. The phase diagram essentially depends on the fraction of occupied sites.…

Disordered Systems and Neural Networks · Physics 2012-01-11 Takehisa Hasegawa , Masataka Sato , Koji Nemoto

We evaluate analytically and numerically the size of the frozen core and various scaling laws for critical Boolean networks that have a power-law in- and/or out-degree distribution. To this purpose, we generalize an efficient method that…

Molecular Networks · Quantitative Biology 2015-06-12 Marco Möller , Barbara Drossel

We analyze the non-equilibrium order-disorder transition of Axelrod's model of social interaction in several complex networks. In a small world network, we find a transition between an ordered homogeneous state and a disordered state. The…

Condensed Matter · Physics 2009-11-07 Konstantin Klemm , Victor M. Eguiluz , Raul Toral , Maxi San Miguel

Scale free dynamics are observed in a variety of physical and biological systems. These include neural activity in which evidence for scale freeness has been reported using a range of imaging modalities. Here, we derive the ways in which…