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Recent advances in the healthcare industry have led to an abundance of unstructured data, making it challenging to perform tasks such as efficient and accurate information retrieval at scale. Our work offers an all-in-one scalable solution…

Information Retrieval · Computer Science 2023-02-15 Shreya Saxena , Raj Sangani , Siva Prasad , Shubham Kumar , Mihir Athale , Rohan Awhad , Vishal Vaddina

Because of the increasing number of electronic data, designing efficient tools to retrieve and exploit documents is a major challenge. Current search engines suffer from two main drawbacks: there is limited interaction with the list of…

Information Retrieval · Computer Science 2010-12-09 Sylvie Ranwez , Vincent Ranwez , Mohameth-François Sy , Jacky Montmain , Michel Crampes

Current research in biology heavily depends on the availability and efficient use of information. In order to build new knowledge, various sources of biological data must often be combined. Semantic Web technologies, which provide a common…

Quantitative Methods · Quantitative Biology 2009-02-19 Claude Pasquier

There is a large number of online documents data sources available nowadays. The lack of structure and the differences between formats are the main difficulties to automatically extract information from them, which also has a negative…

Here we present a holistic approach for data exploration on dense knowledge graphs as a novel approach with a proof-of-concept in biomedical research. Knowledge graphs are increasingly becoming a vital factor in knowledge mining and…

Artificial Intelligence · Computer Science 2019-12-16 Jens Dörpinghaus , Alexander Apke , Vanessa Lage-Rupprecht , Andreas Stefan

In multicenter biomedical research, integrating data from multiple decentralized sites provides more robust and generalizable findings due to its larger sample size and the ability to account for the between-site heterogeneity. However,…

Methodology · Statistics 2025-12-29 Xiaokang Liu , Yuchen Yang , Yifei Sun , Jiang Bian , Yanyuan Ma , Raymond J. Carroll , Yong Chen

The Health-e-Child project aims to develop an integrated healthcare platform for European paediatrics. In order to achieve a comprehensive view of childrens health, a complex integration of biomedical data, information, and knowledge is…

Databases · Computer Science 2007-05-23 E. Jimenez-Ruiz , R. Berlanga , I. Sanz , R. McClatchey , R. Danger , D. Manset , J. Paraire , A. Rios

The semantic e-government is a new application field accompanying the development of semantic web where the ontologies have become a fertile field of investigation. This is due firstly to both the complexity and the size of e-government…

Computers and Society · Computer Science 2012-05-29 Hassania Ouchetto , Ouail Ouchetto , Ounsa Roudies

Bio-medical ontologies can contain a large number of concepts. Often many of these concepts are very similar to each other, and similar or identical to concepts found in other bio-medical databases. This presents both a challenge and…

Computational Engineering, Finance, and Science · Computer Science 2015-05-18 Jennifer D. Warrender , Phillip Lord

There is a growing need to semantically process and integrate clinical data from different sources for clinical research. This paper presents an approach to integrate EHRs from heterogeneous resources and generate integrated data in…

The metadata about scientific experiments published in online repositories have been shown to suffer from a high degree of representational heterogeneity---there are often many ways to represent the same type of information, such as a…

Computation and Language · Computer Science 2020-12-17 Rafael S. Gonçalves , Maulik R. Kamdar , Mark A. Musen

Traditional information retrieval systems represent documents and queries by keyword sets. However, the content of a document or a query is mainly defined by both keywords and named entities occurring in it. Named entities have ontological…

Information Retrieval · Computer Science 2018-07-17 Vuong M. Ngo , Tru H. Cao

Today's conventional search engines hardly do provide the essential content relevant to the user's search query. This is because the context and semantics of the request made by the user is not analyzed to the full extent. So here the need…

Information Retrieval · Computer Science 2012-07-25 Swathi Rajasurya , Tamizhamudhu Muralidharan , Sandhiya Devi , S. Swamynathan

The development of a company often entails the emergence of autonomous data sources with different structural and technological organization. This can lead to the inability of data analysis at a high level and a violation of the integrity…

Information Retrieval · Computer Science 2022-01-14 A. Kalinin , E. Shikov , D. Vaganov , A. Lysenko

The purpose of this work is to find out how different library classification systems and linguistic ontologies arrange a particular domain of interest and what are the limitations for information retrieval. We use knowledge representation…

Artificial Intelligence · Computer Science 2023-06-21 Subhashis Das , Debashis Naskar , Sayon Roy

While the biomedical community has published several "open data" sources in the last decade, most researchers still endure severe logistical and technical challenges to discover, query, and integrate heterogeneous data and knowledge from…

Artificial Intelligence · Computer Science 2020-06-09 Maulik R. Kamdar , Mark A. Musen

Research has shown that the general health and oral health of an individual are closely related. Accordingly, current practice of isolating the information base of medical and oral health domains can be dangerous and detrimental to the…

Artificial Intelligence · Computer Science 2014-04-01 Tejal Shah , Fethi Rabhi , Pradeep Ray , Kerry Taylor

Over the past decade, there has been a steep rise in the data-driven analysis in major areas of medicine, such as clinical decision support system, survival analysis, patient similarity analysis, image analytics etc. Most of the data in the…

Information Retrieval · Computer Science 2020-10-06 Sheikh Shams Azam , Manoj Raju , Venkatesh Pagidimarri , Vamsi Kasivajjala

Big Data architectures allow to flexibly store and process heterogeneous data, from multiple sources, in their original format. The structure of those data, commonly supplied by means of REST APIs, is continuously evolving. Thus data…

Databases · Computer Science 2018-02-05 Sergi Nadal , Oscar Romero , Alberto Abelló , Panos Vassiliadis , Stijn Vansummeren

Although the goal of achieving semantic interoperability of electronic health records (EHRs) is pursued by many researchers, it has not been accomplished yet. In this paper, we present a proposal that smoothes out the way toward the…

Artificial Intelligence · Computer Science 2024-01-23 Idoia Berges , Jesús Bermúdez , Arantza Illarramendi