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Motivation: Stochastic reaction networks are a widespread model to describe biological systems where the presence of noise is relevant, such as in cell regulatory processes. Unfortu-nately, in all but simplest models the resulting discrete…

Quantitative Methods · Quantitative Biology 2021-01-12 Luca Cardelli , Isabel Cristina Perez-Verona , Mirco Tribastone , Max Tschaikowski , Andrea Vandin , Tabea Waizmann

Stochastic reaction networks (SRNs) provide models of many real-world networks. Examples include networks in epidemiology, pharmacology, genetics, ecology, chemistry, and social sciences. Here, we model stochastic reaction networks by…

Probability · Mathematics 2023-01-26 Carsten Wiuf , Chuang Xu

The purpose of this paper is to investigate experimental and numerical dynamic responses of a preloaded vibro-impacting Hertzian contact under sinusoidal excitation. Dynamic response under random excitation is analysed in the second part of…

Classical Physics · Physics 2016-08-14 Emmanuel Rigaud , Joël Perret-Liaudet

We study collective dynamics of complex networks of stochastic excitable elements, active rotators. In the thermodynamic limit of infinite number of elements, we apply a mean-field theory for the network and then use a Gaussian…

Chaotic Dynamics · Physics 2013-11-19 Bernard Sonnenschein , Michael A. Zaks , Alexander B. Neiman , Lutz Schimansky-Geier

We consider the stochastic system of interacting neurons introduced in De Masi et al. (2015) and in Fournier and L\"ocherbach (2016) and then further studied in Erny, L\"ocherbach and Loukianova (2021) in a diffusive scaling. The system…

Probability · Mathematics 2022-11-30 Xavier Erny , Eva Löcherbach , Dasha Loukianova

The stochastic Hodgkin-Huxley neurons considered in this paper replace time-constant deterministic input $a dt$ of the classical deterministic model by increments $\vartheta dt + dX_t$ of a stochastic process: $X$ is Ornstein-Uhlenbeck with…

Probability · Mathematics 2023-06-22 Reinhard Höpfner

We study in this paper the effect of an unique initial stimulation on random recurrent networks of leaky integrate and fire neurons. Indeed given a stochastic connectivity this so-called spontaneous mode exhibits various non trivial…

Neural and Evolutionary Computing · Computer Science 2007-05-23 H. Soula , G. Beslon , O. Mazet

New large deviations results that characterize the asymptotic information rates for general $d$-dimensional ($d$-D) stationary Gaussian fields are obtained. By applying the general results to sensor nodes on a two-dimensional (2-D) lattice,…

Information Theory · Computer Science 2009-03-10 Youngchul Sung , H. Vincent Poor , Heejung Yu

Despite the huge number of neurons composing a brain network, ongoing activity of local cell assemblies composing cortical columns is intrinsically stochastic. Fluctuations in their instantaneous rate of spike firing $\nu(t)$ scale with the…

Neurons and Cognition · Quantitative Biology 2024-04-15 Gianni V. Vinci , Roberto Benzi , Maurizio Mattia

We analyze states of stationary activity in randomly coupled quadratic integrate-and-fire neurons using stochastic mean-field theory. Specifically, we consider the two cases of Gaussian random coupling and Cauchy random coupling, which are…

Disordered Systems and Neural Networks · Physics 2026-05-13 Ralf Tönjes , Chunming Zheng , Wenping Cui , Benjamin Lindner

In computer simulations of spiking neural networks, often it is assumed that every two neurons of the network are connected by a probability of 2\%, 20\% of neurons are inhibitory and 80\% are excitatory. These common values are based on…

Neurons and Cognition · Quantitative Biology 2015-03-06 Hamed Seyed-allaei

Since the first experimental evidences of active conductances in dendrites, most neurons have been shown to exhibit dendritic excitability through the expression of a variety of voltage-gated ion channels. However, despite experimental and…

Neurons and Cognition · Quantitative Biology 2012-01-18 Leonardo L. Gollo , Osame Kinouchi , Mauro Copelli

The models in statistical physics such as an Ising model offer a convenient way to characterize stationary activity of neural populations. Such stationary activity of neurons may be expected for recordings from in vitro slices or…

Neurons and Cognition · Quantitative Biology 2017-05-05 Christian Donner , Klaus Obermayer , Hideaki Shimazaki

Motivated by recent observations that long-range connections (LRC) play a role in various brain phenomena, we have observed two distinct dynamical transitions in the activity of excitable media where waves propagate both between neighboring…

Disordered Systems and Neural Networks · Physics 2008-04-07 Sitabhra Sinha , Jari Saramaki , Kimmo Kaski

While most models of randomly connected networks assume nodes with simple dynamics, nodes in realistic highly connected networks, such as neurons in the brain, exhibit intrinsic dynamics over multiple timescales. We analyze how the…

Disordered Systems and Neural Networks · Physics 2019-09-11 Samuel P. Muscinelli , Wulfram Gerstner , Tilo Schwalger

This article presents a biological neural network model driven by inhomogeneous Poisson processes accounting for the intrinsic randomness of synapses. The main novelty is the introduction of local interactions: each firing neuron triggers…

Probability · Mathematics 2021-08-17 Maximiliano Altamirano , Roberto Cortez , Matthieu Jonckheere , Lasse Leskelä

The behavior of some stochastic chemical reaction networks is largely unaffected by slight inaccuracies in reaction rates. We formalize the robustness of state probabilities to reaction rate deviations, and describe a formal connection…

Computational Complexity · Computer Science 2009-01-28 David Soloveichik

We study the effects of network topology on the response of networks of coupled discrete excitable systems to an external stochastic stimulus. We extend recent results that characterize the response in terms of spectral properties of the…

Disordered Systems and Neural Networks · Physics 2015-03-18 Daniel B. Larremore , Woodrow L. Shew , Edward Ott , Juan G. Restrepo

A stochastic model of excitatory and inhibitory interactions which bears universality traits is introduced and studied. The endogenous component of noise, stemming from finite size corrections, drives robust inter-nodes correlations, that…

Disordered Systems and Neural Networks · Physics 2017-08-16 Clement Zankoc , Duccio Fanelli , Francesco Ginelli , Roberto Livi

We theoretically describe how weak signals may be efficiently transmitted throughout more than one frequency range in noisy excitable media by kind of stochastic multiresonance. This serves us here to reinterpret recent experiments in…

Data Analysis, Statistics and Probability · Physics 2015-05-27 J. J. Torres , J. Marro , J. F. Mejias
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