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With the rise of computers, simulation models have emerged beside the more traditional statistical and mathematical models as a third pillar for ecological analysis. Broadly speaking, a simulation model is an algorithm, typically…

Populations and Evolution · Quantitative Biology 2018-12-24 Florian Hartig

In a recent paper we have suggested that the finite temperature density matrix can be computed efficiently by a combination of polynomial expansion and iterative inversion techniques. We present here significant improvements over this…

Materials Science · Physics 2010-10-19 Michele Ceriotti , Thomas D. Kühne , Michele Parrinello

A method is presented which allows for a tremendous speed-up of computer simulations of statistical systems by orders of magnitude. This speed-up is achieved by means of a new observable, while the algorithm of the simulation remains…

Statistical Mechanics · Physics 2013-05-29 M. Kastner , J. D. Munoz , M. Promberger

Purpose - This paper continues the development of a comprehensive methodology for fully resolved numerical simulations of fusion deposition modeling. Design/methodology/approach - A front-tracking/finite volume method introduced in Part I…

Fluid Dynamics · Physics 2018-02-27 Huanxiong Xia , Jiacai Lu , Gretar Tryggvason

The goal of the paper is to automatize the selection of mechanisms which are able to describe a set of measurements. In order to do so first we construct a set of possible mechanism fulfilling chemically reasonable requirements with a given…

Numerical Analysis · Mathematics 2019-04-03 Tibor Nagy , János Tóth , Tamás Ladics

A new discretization approach is presented for the simulation of flow in complex poro-fractured media described by means of the Discrete Fracture and Matrix Model. The method is based on the numerical optimization of a properly defined…

Numerical Analysis · Mathematics 2020-04-10 Stefano Berrone , Alessandro D'Auria , Stefano Scialo'

This paper is about partitioning in parallel and distributed simulation. That means decomposing the simulation model into a numberof components and to properly allocate them on the execution units. An adaptive solution based on…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-07 Gabriele D'Angelo

Due to improvements in computer performance and algorithms, the rapidly increasing cost for unquenched Wilson-type fermions with lighter quarks has been ameliorated and new simulations are now possible. Here we present results using two…

High Energy Physics - Lattice · Physics 2008-11-26 M. Göckeler , R. Horsley , Y. Nakamura , D. Pleiter , P. E. L. Rakow , G. Schierholz , W. Schroers , T. Streuer , H. Stüben , J. M. Zanotti

The recent experimental progresses in handling microscopic systems have allowed to probe them at levels where fluctuations are prominent, calling for stochastic modeling in a large number of physical, chemical and biological phenomena. This…

Statistical Mechanics · Physics 2017-03-08 Stefano Bo , Antonio Celani

Polymers consisting of more than one type of monomer, known as copolymers, are vital to both living and synthetic systems. Copolymerisation has been studied theoretically in a number of contexts, often by considering a Markov process in…

A recently developed technique to determine the order and strength of phase transitions by extracting the density of partition function zeroes (a continuous function) from finite-size systems (a discrete data set) is generalized to systems…

High Energy Physics - Lattice · Physics 2009-11-07 Wolfhard Janke , Des Johnston , Ralph Kenna

A computer simulation has to be fast to be helpful, if it is employed to study the behavior of a multicomponent dynamic system. This paper discusses modeling concepts and algorithmic techniques useful for creating such fast simulations.…

Data Structures and Algorithms · Computer Science 2007-05-23 Boris D. Lubachevsky

We describe an improved version of the quantum simulation method based on the implementation of a truncated Taylor series of the evolution operator. The idea is to add an extra step to the previously known algorithm which implements an…

Quantum Physics · Physics 2017-06-05 Leonardo Novo , Dominic W. Berry

The Cellular Potts Model (CPM) is a lattice based modeling technique which is widely used for simulating cellular patterns such as foams or biological tissues. Despite its realism and generality, the standard Monte Carlo algorithm used in…

Soft Condensed Matter · Physics 2016-09-14 Marc Durand , Etienne Guesnet

Three topics concerning fermion simulation algorithms are discussed: 1.) A performance comparison of the multiboson technique to simulate dynamical fermions and the Kramers equation algorithm, 2.) the question of reversibility in the Hybrid…

High Energy Physics - Lattice · Physics 2007-05-23 Karl Jansen , Beat Jegerlehner , Chuan Liu

This paper introduces a novel general-purpose algorithm for Pauli decomposition that employs matrix slicing and addition rather than expensive matrix multiplication, significantly accelerating the decomposition of multi-qubit matrices. In a…

Quantum Physics · Physics 2024-09-25 Lukas Hantzko , Lennart Binkowski , Sabhyata Gupta

This work proposes an extension of phase change and latent heat models for the simulation of metal powder bed fusion additive manufacturing processes on the macroscale and compares different models with respect to accuracy and numerical…

Computational Engineering, Finance, and Science · Computer Science 2021-09-07 Sebastian D. Proell , Wolfgang A. Wall , Christoph Meier

Heat transfer simulations of the fused filament fabrication process are an important tool to predict bonding, residual stresses and strength of 3D printed parts. But in order to capture the significant thermal gradients that occur in the…

Computational Engineering, Finance, and Science · Computer Science 2023-05-08 Nathalie Ramos , Christoph Mittermeier , Josef Kiendl

This note proposes a simple and general framework of dynamic mode decomposition (DMD) and a mode selection for large datasets. The proposed framework explicitly introduces a preconditioning step using an incremental proper orthogonal…

Fluid Dynamics · Physics 2017-08-02 Yuya Ohmichi

This paper presents an overview of the theories and computer implementation aspects of phase field models (PFM) of fracture. The advantage of PFM over discontinuous approaches to fracture is that PFM can elegantly simulate complicated…

Geophysics · Physics 2023-09-11 X. Zhuang , S. Zhou , G. D. Huynh , P. Areias , T. Rabczuk