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JuMP is an open-source modeling language that allows users to express a wide range of optimization problems (linear, mixed-integer, quadratic, conic-quadratic, semidefinite, and nonlinear) in a high-level, algebraic syntax. JuMP takes…

Optimization and Control · Mathematics 2017-05-08 Iain Dunning , Joey Huchette , Miles Lubin

We evaluate optimized parallel sparse matrix-vector operations for several representative application areas on widespread multicore-based cluster configurations. First the single-socket baseline performance is analyzed and modeled with…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-01 Gerald Schubert , Holger Fehske , Georg Hager , Gerhard Wellein

Large language models (LLMs) have made significant progress in natural language understanding and generation, driven by scalable pretraining and advanced finetuning. However, enhancing reasoning abilities in LLMs, particularly via…

Artificial Intelligence · Computer Science 2025-05-30 Huimu Yu , Xing Wu , Haotian Xu , Debing Zhang , Songlin Hu

In this article, we present a Shell Language Preprocessing (SLP) library, which implements tokenization and encoding directed at parsing Unix and Linux shell commands. We describe the rationale behind the need for a new approach with…

Machine Learning · Computer Science 2022-07-08 Dmitrijs Trizna

We present SClib, a simple hack that allows easy and straightforward evaluation of C functions within Python code, boosting flexibility for better trade-off between computation power and feature availability, such as visualization and…

Mathematical Software · Computer Science 2014-12-22 Esteban Fuentes , Hector E. Martinez

High-performance computing are based more and more in heterogeneous architectures and GPGPUs have become one of the main integrated blocks in these, as the recently emerged Mali GPU in embedded systems or the NVIDIA GPUs in HPC servers. In…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-07-28 Albert Saà-Garriga , David Castells-Rufas , Jordi Carrabina

The past years have seen widening efforts at increasing Prolog's declarativeness and expressiveness. Tabling has proved to be a viable technique to efficiently overcome SLD's susceptibility to infinite loops and redundant subcomputations.…

Programming Languages · Computer Science 2007-05-23 Ricardo Rocha , Fernando Silva , Vitor Santos Costa

Scripting languages such as Python and R have been widely adopted as tools for the productive development of scientific software because of the power and expressiveness of the languages and available libraries. However, deploying scripted…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-08 Justin M. Wozniak , Timothy G. Armstrong , Ketan C. Maheshwari , Daniel S. Katz , Michael Wilde , Ian T. Foster

Parallelization schemes are essential in order to exploit the full benefits of multi-core architectures. In said architectures, the most comprehensive parallelization API is OpenMP. However, the introduction of correct and optimal OpenMP…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-28 Idan Mosseri , Lee-or Alon , Re'em Harel , Gal Oren

Despite advancements in the areas of parallel and distributed computing, the complexity of programming on High Performance Computing (HPC) resources has deterred many domain experts, especially in the areas of machine learning and…

One of the barriers to the adoption of parallel computing is the inherent complexity of its programming. The Open Multi-Processing (OpenMP) Application Programming Interface (API) facilitates such implementations, providing high abstraction…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-21 Reinaldo Agostinho de Souza Filho , Diego V. Cirilo do Nascimento , Samuel Xavier-de-Souza

FPGA-based hardware accelerators have received increasing attention mainly due to their ability to accelerate deep pipelined applications, thus resulting in higher computational performance and energy efficiency. Nevertheless, the amount of…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-23 R. Nepomuceno , R. Sterle , G. Valarini , M. Pereira , H. Yviquel , G. Araujo

Recent advances in large language models (LLMs) have significantly accelerated progress in code translation, enabling more accurate and efficient transformation across programming languages. While originally developed for natural language…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-12 Arijit Bhattacharjee , Ali TehraniJamsaz , Le Chen , Niranjan Hasabnis , Mihai Capota , Nesreen Ahmed , Ali Jannesari

We have built an open-source software system for the modeling of biomolecular reaction networks, SloppyCell, which is written in Python and makes substantial use of third-party libraries for numerics, visualization, and parallel…

Quantitative Methods · Quantitative Biology 2007-05-23 Christopher R. Myers , Ryan N. Gutenkunst , James. P. Sethna

OpenCL for FPGA enables developers to design FPGAs using a programming model similar for processors. Recent works have shown that code optimization at the OpenCL level is important to achieve high computational efficiency. However, existing…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-06 Ji Liu , Abdullah-Al Kafi , Xipeng Shen , Huiyang Zhou

Message Passing Interface (MPI) plays a crucial role in distributed memory parallelization across multiple nodes. However, parallelizing MPI code manually, and specifically, performing domain decomposition, is a challenging, error-prone…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-31 Nadav Schneider , Tal Kadosh , Niranjan Hasabnis , Timothy Mattson , Yuval Pinter , Gal Oren

Fortran is the lingua franca of HPC code development and as such it is crucial that we as a community have open source Fortran compilers capable of generating high performance executables. Flang is LLVM's Fortran compiler and leverages MLIR…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-09-30 Nick Brown

Numpy and SciPy are program libraries for the Python scripting language, which apply to a large spectrum of numerical and scientific computing tasks. The Sage project provides a multiplatform software environment which enables one to use,…

Numerical Analysis · Mathematics 2012-08-21 Lauri Ruotsalainen , Matti Vuorinen

Symbolic Machine Learning Prover (SMLP) is a tool and a library for system exploration based on data samples obtained by simulating or executing the system on a number of input vectors. SMLP aims at exploring the system based on this data…

Machine Learning · Computer Science 2024-02-05 Franz Brauße , Zurab Khasidashvili , Konstantin Korovin

For over ten years, the constraint integer programming framework SCIP has been extended by capabilities for the solution of convex and nonconvex mixed-integer nonlinear programs (MINLPs). With the recently published version 8.0, these…

Optimization and Control · Mathematics 2023-01-03 Ksenia Bestuzheva , Antonia Chmiela , Benjamin Müller , Felipe Serrano , Stefan Vigerske , Fabian Wegscheider