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We develop velocity-dependent models describing the evolution of string networks that involve several types of interacting strings, each with a different tension. These incorporate the formation of Y-type junctions with links stretching…

Astrophysics · Physics 2014-11-18 A. Avgoustidis , E. P. S. Shellard

We perform Monte Carlo simulations to study the elastic properties of the helix-coil worm-like chain model of alpha-helical polypeptides. In this model the secondary structure enters as a scalar (Ising like) variable that controls the local…

Soft Condensed Matter · Physics 2007-05-23 Buddhapriya Chakrabarti , Alex J. Levine

When a system undergoes a quantum phase transition, the ground-state wave-function shows a change of nature, which can be monitored using the fidelity concept. We introduce two Quantum Monte Carlo schemes that allow the computation of…

Strongly Correlated Electrons · Physics 2009-10-21 David Schwandt , Fabien Alet , Sylvain Capponi

Hybrid molecular dynamics/Monte Carlo simulations used to study melts of unentangled, thermoreversibly associating supramolecular polymers. In this first of a series of papers, we describe and validate a model that is effective in…

Soft Condensed Matter · Physics 2015-05-13 Robert S. Hoy , Glenn H. Fredrickson

We analyze the non-equilibrium shape fluctuations of giant unilamellar vesicles encapsulating motile bacteria. Owing to bacteria--membrane collisions, we experimentally observe a significant increase in the magnitude of membrane…

Soft Condensed Matter · Physics 2020-04-22 Sho C. Takatori , Amaresh Sahu

Biomembranes are thin capacitors with the unique feature of displaying phase transitions in a physiologically relevant regime. We investigate the voltage and lateral pressure dependence of their capacitance close to their chain melting…

Biological Physics · Physics 2012-09-18 Thomas Heimburg

Current theories on the conformation and dynamics of unknotted and non-concatenated ring polymers in melt conditions describe each ring as a tree-like double-folded object. While evidence from simulations supports this picture on a single…

Soft Condensed Matter · Physics 2022-12-02 Mattia Alberto Ubertini , Jan Smrek , Angelo Rosa

We present a novel buckling instability relevant to membrane budding in eukaryotic cells. In this mechanism, curved filaments bind to a lipid bilayer without changing its intrinsic curvature. As more and more filaments adsorb, newly added…

Biological Physics · Physics 2009-07-16 Martin Lenz , Daniel J. G. Crow , Jean-François Joanny

In biological settings membranes typically interact locally with other membranes or the extracellular matrix in the exterior, as well as with internal cellular structures such as the cytoskeleton. Characterization of the dynamic properties…

Biological Physics · Physics 2019-09-04 Josip Augustin Janeš , Daniel Schmidt , Udo Seifert , Ana-Sunčana Smith

We consider the evolution of a network of strings in an expanding universe, allowing for the formation of junctions between strings of different tensions. By explicitly including, in the velocity-dependent evolution equations for the…

High Energy Physics - Phenomenology · Physics 2010-04-06 A. Avgoustidis , E. J. Copeland

The application of systems and control theory to membrane physiology is presented here. Modeling efforts have focused on describing those physiologically realistic mechanisms which govern the regulation of membrane permeability in nerve.…

Biological Physics · Physics 2021-09-29 Robert F. Melendy

Through direct examination of the effect of the OM limit on the M2-brane worldvolume action, we derive a membrane action for OM theory, and more generally, for the eleven-dimensional M-theoretic construct known as Galilean or Wrapped…

High Energy Physics - Theory · Physics 2009-11-07 J. Antonio Garcia , Alberto Guijosa , J. David Vergara

We investigate the critical behaviors of correlation length and critical exponents for strongly interacting bosons in a two-dimensional optical lattice via quantum Monte Carlo simulations. By comparing the full numerical results to those…

Quantum Gases · Physics 2017-05-24 Hao Lee , Shiang Fang , Daw-Wei Wang

We investigate theoretically the effect of polymer tension on the collective behavior of reversibly binding cross-links. For this purpose, we employ a model of two weakly bending wormlike chains aligned in parallel by a tensile force, with…

Biological Physics · Physics 2015-02-10 Panayotis Benetatos , Alice von der Heydt , Annette Zippelius

The wavelength of a periodic spatial structure of Turing type is an intrinsic property of the considered reaction-diffusion dynamics and we address the question of its control at the microscopic scale for given dynamical parameters. The…

Pattern Formation and Solitons · Physics 2018-09-26 Gabriel Morgado , Bogdan Nowakowski , Annie Lemarchand

We study bosonic and space-time supersymmetric membranes with small tensions corresponding to stretched configurations. Using a generalized lightcone gauge, one may set up a perturbation theory around configurations having zero tension. We…

High Energy Physics - Theory · Physics 2009-11-11 Jonas Bjornsson , Stephen Hwang

I study a relativistic open string coupling through its endpoints to a plane wave with arbitrary temporal profile. The string's transverse oscillations respond linearly to the external field. This makes it possible to solve the classical…

High Energy Physics - Theory · Physics 2015-06-26 Constantin Bachas

The membrane components of cellular organelles have been shown to segregate into domains as the result of biochemical maturation. We propose that the dynamical competition between maturation and lateral segregation of membrane components…

Subcellular Processes · Quantitative Biology 2015-06-17 Serge Dmitrieff , Pierre Sens

We review theoretical results for the adhesion-induced phase behavior of biomembranes. The focus is on models in which the membranes are represented as discretized elastic sheets with embedded adhesion molecules. We present several…

Soft Condensed Matter · Physics 2007-09-25 Thomas R. Weikl , Reinhard Lipowsky

We introduce an efficient, scalable Monte Carlo algorithm to simulate cross-linked architectures of freely-jointed and discrete worm-like chains. Bond movement is based on the discrete tractrix construction, which effects conformational…

Soft Condensed Matter · Physics 2010-12-27 Henry E. Amuasi , Cornelis Storm