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In this work a new strategy is proposed in order to build analytic and microscopic models of fluctuating polymer rings subjected to topological constraints. The topological invariants used to fix these constraints belong to a wide class of…

Statistical Mechanics · Physics 2020-01-08 Franco Ferrari

We study a class of micromanipulation experiments, exemplified by the pulling apart of the two strands of double-stranded DNA (dsDNA). When the pulling force is increased to a critical value, an ``unzipping'' transition occurs. For random…

Soft Condensed Matter · Physics 2009-10-31 David K. Lubensky , David R. Nelson

This paper reports the force spectroscopy analysis of a polymer that translocates from one side of a membrane to the other side through an extended pore, pulled by a cantilever that moves with constant velocity against the damping and the…

Soft Condensed Matter · Physics 2018-12-12 Alessandro Fiasconaro , Fernando Falo

The entropic effects of anchored polymers on biomembranes are studied using simulations of a meshless membrane model combined with anchored linear polymer chains. The bending rigidity and spontaneous curvature are investigated for anchored…

Soft Condensed Matter · Physics 2015-02-18 Hao Wu , Hayato Shiba , Hiroshi Noguchi

We investigate the anomalous dynamics of unentangled polymer melts. The proposed equation of motion formally relates the anomalous center-of-mass diffusion, as observed in computer simulations and experiments, to the nature of the effective…

Statistical Mechanics · Physics 2009-11-07 M. Guenza

Experiments using nanofluidic devices have proven effective in characterizing the physical properties of polymers confined to small cavities. Two recent studies using such methods examined the organization and dynamics of two DNA molecules…

Soft Condensed Matter · Physics 2022-12-29 Desiree A. Rehel , James M. Polson

Force versus extension curves measure entropic elasticity of single polymer chain in force spectroscopy experiments. A Worm-like Chain model is used to describe force extension experiments with an intrinsic chain parameter called…

Soft Condensed Matter · Physics 2021-07-28 Vikhyaat Ahlawat , Shatruhansingh Rajput , Shivprasad Patil

Realising quantum control and entanglement of particles is crucial for advancing both quantum technologies and fundamental science. Significant developments in this domain have been achieved in a variety of systems. In this context,…

Atomic Physics · Physics 2025-01-27 Daniel K. Ruttley , Tom R. Hepworth , Alexander Guttridge , Simon L. Cornish

The cage model for polymer reptation, proposed by Evans and Edwards, and its recent extension to model DNA electrophoresis, are studied by numerically exact computation of the drift velocities for polymers with a length L of up to 15…

Soft Condensed Matter · Physics 2009-11-07 A. van Heukelum , G. T. Barkema , R. H. Bisseling

Measurements of the deflection induced by thermal noise have been performed on a rectangular atomic force microscope cantilever in air. The detection method, based on polarization interferometry, can achieve a resolution of 1E-14 m/rtHz in…

Statistical Mechanics · Physics 2009-11-17 Pierdomenico Paolino , Bruno Tiribilli , Ludovic Bellon

Particles that can be trapped in optical tweezers range from tens of microns down to tens of nanometres in size. Interestingly, this size range includes large macromolecules. We show experimentally, in agreement with theoretical…

Optics · Physics 2007-05-23 W. Singer , T. A. Nieminen , N. R. Heckenberg , H. Rubinsztein-Dunlop

In a variety of situations, isolated polymer molecules are found in a vacuum and here we examine their properties. Angular momentum conservation is shown to significantly alter the average size of a chain and its conservation is only broken…

Soft Condensed Matter · Physics 2009-11-13 J. M. Deutsch

The electrical conductivity of PVC films prepared with a patented plasticizer of type "A" was measured with high precision automated setup, based on standard ring sell with a voltage range much less than breakdown voltage. Continual…

Mesoscale and Nanoscale Physics · Physics 2010-03-12 D. V. Vlasov , L. A. Apresyan , V. I. Krystob , T. V. Vlasova

We investigate the translocation dynamics of a folded linear polymer which is pulled through a nanopore by an external force. To this end, we generalize the iso-flux tension propagation (IFTP) theory for end-pulled polymer translocation to…

Soft Condensed Matter · Physics 2019-12-18 Bappa Ghosh , Jalal Sarabadani , Srabanti Chaudhury , Tapio Ala-Nissila

Computer simulations are used to characterize the entropic force of one or more polymers tethered to the tip of a hard conical object that interact with a nearby hard flat surface. Pruned-enriched-Rosenbluth-method (PERM) Monte Carlo…

Soft Condensed Matter · Physics 2022-08-31 James M. Polson , Roland G. MacLennan

The drag forces acting on a single polystyrene sphere in the vicinity of an oscillating glass plate have been measured using an optical tweezer. The phase of the sphere is found to be a sensitive probe of the dynamics of the sphere. The…

Soft Condensed Matter · Physics 2007-05-23 Prerna Sharma , Shankar Ghosh , S. Bhattacharya

Guided-wave atom interferometers measure interference effects using atoms held in a confining potential. In one common implementation, the confinement is primarily two-dimensional, and the atoms move along the nearly free dimension under…

Atomic Physics · Physics 2009-11-13 J. H. T. Burke , B. Deissler , K. J. Hughes , C. A. Sackett

Single-molecule force-extension experiments have allowed quantitative measurements of the mechanical responses of biomolecules to applied forces explaining their roles in key biological functions. Electrophoretic stretching of charged…

Soft Condensed Matter · Physics 2024-02-21 Ananya Mondal , Greg Morrison

Dual trap optical tweezers are often used in high-resolution measurements in single-molecule biophysics. Such measurements can be hindered by the presence of extraneous noise sources, the most prominent of which is the coupling of…

Biological Physics · Physics 2013-07-03 Marco Ribezzi Crivellari , Felix Ritort

We demonstrate a non-stereoscopic, video-based particle tracking system with optical tweezers to study fluid flow in 3D in the vicinity of glass nanopores. In particular, we used the Quadrant Interpolation algorithm to extend our…

Fluid Dynamics · Physics 2022-05-25 Jeffrey Mc Hugh , Alice L. Thorneywork , Kurt Andresen , Ulrich F. Keyser
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