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It has recently been discovered that many biological systems, when represented as graphs, exhibit a scale-free topology. One such system is the set of structural relationships among protein domains. The scale-free nature of this and other…

Populations and Evolution · Quantitative Biology 2009-11-10 Eric J. Deeds , Eugene I. Shakhnovich

The principle that 'the brand effect is attractive' underlies preferential attachment. Here we show that the brand effect is just one dimension of attractiveness. Another dimension is competitiveness. We firstly develop a general framework…

Physics and Society · Physics 2014-05-20 Jin-Li Guo

The Barab\'{a}si-Albert (BA) model is extended to include the concept of local world and the microscopic event of adding edges. With probability $p$, we add a new node with $m$ edges which preferentially link to the nodes presented in the…

Disordered Systems and Neural Networks · Physics 2009-11-11 Bing Wang , Huanwen Tang , Zhongzhi Zhang , Zhilong Xiu

Many complex systems have been shown to share universal properties of organization, such as scale independence, modularity and self-similarity. We borrow tools from statistical physics in order to study structural preferential attachment…

We examine the effects of preferential attachment on a model of competing clusters. In the original model, cluster masses grow at the expense of their neighbours; on a lattice, this is known to result in the asymptotic survival and…

Physics and Society · Physics 2014-12-16 Suman Aich , Anita Mehta

This paper proposes an attributed network growth model. Despite the knowledge that individuals use limited resources to form connections to similar others, we lack an understanding of how local and resource-constrained mechanisms explain…

Social and Information Networks · Computer Science 2019-04-17 Harshay Shah , Suhansanu Kumar , Hari Sundaram

Scale-free networks with small power law exponent are known to be robust, meaning that their qualitative topological structure cannot be altered by random removal of even a large proportion of nodes. By contrast, it has been argued in the…

Probability · Mathematics 2013-08-23 Maren Eckhoff , Peter Mörters

We study a model for the evolution of chemical species under a combination of population dynamics on a short time scale and a selection mechanism on a longer time scale. Least fit nodes are replaced by new nodes whose links are attached to…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 Areejit Samal , Hildegard Meyer-Ortmanns

The Watts-Strogatz algorithm of transferring the square lattice to a small world network is modified by introducing preferential rewiring constrained by connectivity demand. The evolution of the network is two-step: sequential preferential…

Statistical Mechanics · Physics 2009-11-11 Danuta Makowiec

It is widely believed that fractality of complex networks origins from hub repulsion behaviors (anticorrelation or disassortativity), which means large degree nodes tend to connect with small degree nodes. This hypothesis was demonstrated…

Physics and Society · Physics 2013-11-14 Li Kuang , Bojin Zheng , Deyi Li , Yuanxiang Li , Yu Sun

Real-world networks tend to be scale free, having heavy-tailed degree distributions with more hubs than predicted by classical random graph generation methods. Preferential attachment and growth are the most commonly accepted mechanisms…

Discrete Mathematics · Computer Science 2022-07-20 Josh Johnston , Tim Andersen

Absorption of elastic waves in complex media is commonly found to increase linearly with frequency, for both longitudinal and shear waves. This ubiquitous property is observed in media such as rocks, unconsolidated sediments, and human…

Soft Condensed Matter · Physics 2025-02-07 Sverre Holm , Joakim Bergli

In this paper, we propose a growing random complex network model, which we call context dependent preferential attachment model (CDPAM), when the preference of a new node to get attached to old nodes is determined by the local and global…

Social and Information Networks · Computer Science 2015-01-13 Pradumn Kumar Pandey , Bibhas Adhikari

We employ simulations of model proteins to study folding on rugged energy landscapes. We construct ``first-passage'' networks as the system transitions from unfolded to native states. The nodes and bonds in these networks correspond to…

Soft Condensed Matter · Physics 2015-05-13 Gregg Lois , J. Blawzdziewicz , Corey S. O'Hern

The preferential attachment model is a natural and popular random graph model for a growing network that contains very well-connected ``hubs''. We study the higher-order connectivity of such a network by investigating the topological…

Probability · Mathematics 2024-06-13 Chunyin Siu , Gennady Samorodnitsky , Christina Lee Yu , Rongyi He

Navigability, an ability to find a logarithmically short path between elements using only local information, is one of the most fascinating properties of real-life networks. However, the exact mechanism responsible for the formation of…

Physics and Society · Physics 2016-07-26 Yury A. Malkov , Alexander Ponomarenko

We propose a network characterization of combinatorial fitness landscapes by adapting the notion of inherent networks proposed for energy surfaces. We use the well-known family of NK landscapes as an example. In our case the inherent…

Neural and Evolutionary Computing · Computer Science 2008-10-21 Sébastien Verel , Gabriela Ochoa , Marco Tomassini

Real-world growth processes and scalings have been broadly categorized into three growth regimes with distinctly different properties and driving forces. The first two are characterized by a positive and constant feedback between growth and…

Physics and Society · Physics 2025-03-20 Alain Govaert , André Teixeira , Emma Tegling

We define a dynamic model of random networks, where new vertices are connected to old ones with a probability proportional to a sublinear function of their degree. We first give a strong limit law for the empirical degree distribution, and…

Probability · Mathematics 2008-07-31 Steffen Dereich , Peter Morters

We study the growth of a directed network, in which the growth is constrained by the cost of adding links to the existing nodes. We propose a new preferential-attachment scheme, in which a new node attaches to an existing node i with…

Statistical Mechanics · Physics 2007-05-23 Volkan Sevim , Per Arne Rikvold