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The genetic code structure into distinct multiplet-classes as well as the numeric degeneracies of the latter are revealed by a two-step process. First, an empirical inventory of the degeneracies (of the shuffled multiplets) in two specific…

Other Quantitative Biology · Quantitative Biology 2009-11-13 Tidjani Negadi

We investigate various aspects of operator quantum error-correcting codes or, as we prefer to call them, subsystem codes. We give various methods to derive subsystem codes from classical codes. We give a proof for the existence of subsystem…

Quantum Physics · Physics 2007-07-13 Salah A. Aly , Andreas Klappenecker , Pradeep Kiran Sarvepalli

We describe the theory of quantum convolutional error correcting codes. These codes are aimed at protecting a flow of quantum information over long distance communication. They are largely inspired by their classical analogs which are used…

Quantum Physics · Physics 2007-05-23 H. Ollivier , J. -P. Tillich

We demonstrate a construction of error-correcting codes from graphs by means of $k$-resolving sets, and present a decoding algorithm which makes use of covering designs. Along the way, we determine the $k$-metric dimension of grid graphs…

Combinatorics · Mathematics 2017-08-29 Robert F. Bailey , Ismael G. Yero

In this paper we investigate the encoding of operator quantum error correcting codes i.e. subsystem codes. We show that encoding of subsystem codes can be reduced to encoding of a related stabilizer code making it possible to use all the…

Quantum Physics · Physics 2008-07-01 Pradeep Kiran Sarvepalli , Andreas Klappenecker

In the field of mathematics, a purely combinatorial equivalent to a simplicial complex, or more generally, a down-set, is an abstract structure known as a family of sets. This family is closed under the operation of taking subsets, meaning…

Information Theory · Computer Science 2024-09-26 Yansheng Wu , Chao Li , Jong Yoon Hyun

The problem of accelerating drug discovery relies heavily on automatic tools to optimize precursor molecules to afford them with better biochemical properties. Our work in this paper substantially extends prior state-of-the-art on…

Chemical Physics · Physics 2019-10-22 Wengong Jin , Regina Barzilay , Tommi Jaakkola

We consider a generalized version of the correlation clustering problem, defined as follows. Given a complete graph $G$ whose edges are labeled with $+$ or $-$, we wish to partition the graph into clusters while trying to avoid errors: $+$…

Data Structures and Algorithms · Computer Science 2016-05-25 Gregory J. Puleo , Olgica Milenkovic

We describe a framework for encoding cluster combinatorics using categorical methods. We give a definition of an abstract cluster structure, which captures the essence of cluster mutation at a tropical level and show that cluster algebras,…

Rings and Algebras · Mathematics 2025-10-06 Jan E. Grabowski , Sira Gratz

Coloring numbers are one of the simplest combinatorial invariants of knots and links to describe. And with Joyce's introduction of quandles, we can understand them more algebraically. But can we extend these invariants to tangles -- knots…

Geometric Topology · Mathematics 2008-03-12 John Armstrong

This paper investigates a unification of distributed source coding, multiple description coding, and source coding with side information at decoders. The equivalence between the multiple-decoder extension of distributed source coding with…

Information Theory · Computer Science 2024-10-28 Jun Muramatsu

Tensor codes are a generalisation of matrix codes. Such codes are defined as subspaces of order-r tensors for which the ambient space is endowed with the tensor-rank as a metric. A class of these codes was introduced by Roth, who also…

Information Theory · Computer Science 2026-05-14 Eimear Byrne , Alain Couvreur , Lucien François

Multiplicity codes are algebraic error-correcting codes generalizing classical polynomial evaluation codes, and are based on evaluating polynomials and their derivatives. This small augmentation confers upon them better local decoding,…

Information Theory · Computer Science 2015-05-29 Swastik Kopparty

The class of closed graphs by a linear ordering on their sets of vertices is investigated. A recent characterization of such a class of graphs is analyzed by using tools from the proper interval graph theory.

Combinatorics · Mathematics 2015-09-23 Marilena Crupi

In this paper, we study properties of nodal orders defined over arbitrary base fields. In particular we give a classification of complete real nodal orders.

Rings and Algebras · Mathematics 2024-10-10 Igor Burban , Yuriy Drozd

We study different notions of slope of a vector bundle over a smooth projective curve with respect to ampleness and affineness in order to apply this to tight closure problems. This method gives new degree estimates from above and from…

Algebraic Geometry · Mathematics 2007-05-23 Holger Brenner

We develop a network coding technique based on flags of subspaces and a corresponding network channel model. To define error correcting codes we introduce a new distance on the flag variety, the Grassmann distance on flags and compare it to…

Information Theory · Computer Science 2016-12-22 Dirk Liebhold , Gabriele Nebe , Angeles Vazquez-Castro

We study vector bundles on the moduli stack of elliptic curves over a local ring R. If R is a field or a discrete valuation ring of (residue) characteristic not 2 or 3, all these vector bundles are sums of line bundles. For R the 3-local…

Algebraic Geometry · Mathematics 2015-04-21 Lennart Meier

The automorphism groups of various linear codes are extensively studied yielding insights into the respective code structure. This knowledge is used in, e.g., theoretical analysis and in improving decoding performance, motivating the…

Information Theory · Computer Science 2024-04-16 Jonathan Mandelbaum , Sisi Miao , Holger Jäkel , Laurent Schmalen

Two broad classes of graphical modeling problems for codes can be identified in the literature: constructive and extractive problems. The former class of problems concern the construction of a graphical model in order to define a new code.…

Information Theory · Computer Science 2007-07-13 Thomas R. Halford , Keith M. Chugg
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