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We illustrate shape mode analysis as a simple, yet powerful technique to concisely describe complex biological shapes and their dynamics. We characterize undulatory bending waves of beating flagella and reconstruct a limit cycle of…

Quantitative Methods · Quantitative Biology 2015-06-22 Steffen Werner , Jochen C. Rink , Ingmar H. Riedel-Kruse , Benjamin M. Friedrich

Reorientation (turning in plane) plays a critical role for all robots in any field application, especially those that in confined spaces. While important, reorientation remains a relatively unstudied problem for robots, including limbless…

Robotics · Computer Science 2022-03-04 Tianyu Wang , Baxi Chong , Yuelin Deng , Ruijie Fu , Howie Choset , Daniel I. Goldman

To study how mental object representations are related to behavior, we estimated sparse, non-negative representations of objects using human behavioral judgments on images representative of 1,854 object categories. These representations…

Machine Learning · Statistics 2019-01-11 Charles Y. Zheng , Francisco Pereira , Chris I. Baker , Martin N. Hebart

The concept of feature selectivity in sensory signal processing can be formalized as dimensionality reduction: in a stimulus space of very high dimensions, neurons respond only to variations within some smaller, relevant subspace. But if…

Neurons and Cognition · Quantitative Biology 2016-03-15 Kanaka Rajan , William Bialek

Microorganisms, such as bacteria and microalgae, often live in habitats consisting of a liquid phase and a plethora of interfaces. The precise ways in which these motile microbes behave in their confined environment remain unclear. Using…

The brain is one of the most studied and highly complex systems in the biological world. It is the information center behind all vertebrate and most invertebrate life, and thus has become a major focus in current research. While many of…

Neurons and Cognition · Quantitative Biology 2015-03-19 Daniel J. Kelleher , Tyler M. Reese , Dylan T. Yott , Antoni Brzoska

In the fluid dynamics video, we present a microfluidic device to measure the propulsive power of nematodes. The device consists of a tapered conduit filled with aqueous solution. The conduit is subjected to a DC electric field with the…

Fluid Dynamics · Physics 2011-10-18 J. Yuan , H-S Chuang , M. Gnatt , D. M. Raizen , H. H. Bau

Evolutionary algorithms offer great promise for the automatic design of robot bodies, tailoring them to specific environments or tasks. Most research is done on simplified models or virtual robots in physics simulators, which do not capture…

Robotics · Computer Science 2020-05-20 Tonnes F. Nygaard , David Howard , Kyrre Glette

We investigate a class of continuum models for the motion of a two-dimensional biological group under the influence of nonlocal social interactions. The dynamics may be uniquely decomposed into incompressible motion and potential motion.…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 C. M. Topaz , A. L. Bertozzi

Much of our understanding of ecological and evolutionary mechanisms derives from analysis of low-dimensional models: with few interacting species, or few axes defining "fitness". It is not always clear to what extent the intuition derived…

Populations and Evolution · Quantitative Biology 2018-02-14 Mikhail Tikhonov , Remi Monasson

Animals must constantly make decisions on the move, such as when choosing among multiple options, or "targets", in space. Recent evidence suggests that this results from a recursive feedback between the (vectorial) neural representation of…

Neurons and Cognition · Quantitative Biology 2025-05-02 Dan Gorbonos , Nir S. Gov , Iain D. Couzin

Biological systems are robust to perturbations at both the genetic and environmental levels. Yet, these same perturbations can elicit variation in behavior. The interplay between functional robustness and behavioral variability is…

Biological Physics · Physics 2021-06-03 Veikko Geyer , Jonathon Howard , Pablo Sartori

We extend the use of Configurational Information Measures (CIMSs) to instantons and vacuum decay in arbitrary spatial dimensions. We find that both the complexity and the information content in the shape of instanton solutions have distinct…

High Energy Physics - Theory · Physics 2018-10-03 Marcelo Gleiser , Damian R. Sowinski

The effects of fluid elasticity on the swimming behavior of the nematode \emph{Caenorhabditis elegans} are experimentally investigated by tracking the nematode's motion and measuring the corresponding velocity fields. We find that fluid…

Fluid Dynamics · Physics 2015-05-27 Xiaoning Shen , P. E. Arratia

We present a simple physical model that recapitulates several features of biological evolution, while being based only on thermally-driven attachment and detachment of elementary building blocks. Through its dynamics, this model samples a…

Populations and Evolution · Quantitative Biology 2025-07-11 Guy Bunin , Olivier Rivoire

The newly discovered Wormhole C--metric is a solution of Einstein's field equation coupled with a phantom scalar field which describes the accelerated wormholes. In the zero acceleration limit the solution reduces to an asymptotically flat…

General Relativity and Quantum Cosmology · Physics 2024-07-12 Soham Chatterjee , Sagnik Roy , Ratna Koley

Elongate limbless robots have the potential to locomote through tightly packed spaces for applications such as search-and-rescue and industrial inspections. The capability to effectively and robustly maneuver elongate limbless robots is…

Many microorganisms live and evolve in complex fluids. Examples include mammalian spermatozoa in cervical mucus, worms (e.g., \textit{C. elegans}) in wet soil, and bacteria (e.g., \textit{H. pylori}) in our stomach lining. Due to the…

Fluid Dynamics · Physics 2022-10-21 Paulo E. Arratia

To establish the relationship between locomotory behavior and dynamics of neural circuits in the nematode C. elegans we combined molecular and theoretical approaches. In particular, we quantitatively analyzed the motion of C. elegans with…

Neurons and Cognition · Quantitative Biology 2008-06-10 Jan Karbowski , Gary Schindelman , Chris J. Cronin , Adeline Seah , Paul W. Sternberg

Learning shared structure across environments facilitates rapid learning and adaptive behavior in neural systems. This has been widely demonstrated and applied in machine learning to train models that are capable of generalizing to novel…

Machine Learning · Statistics 2025-04-09 Ayesha Vermani , Josue Nassar , Hyungju Jeon , Matthew Dowling , Il Memming Park
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