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In this paper we develop a probabilistic micro-scale compartmental model and use it to study macro-scale properties of axonal transport, the process by which intracellular cargo is moved in the axons of neurons. By directly modeling the…

Biological Physics · Physics 2011-05-24 Lea Popovic , Scott A. McKinley , Michael C. Reed

The cellular automaton (CA) pulsing model (arXiv:1806.06416) described the surprising phenomenon of spontaneous, sustained and robust rhythmic oscillations, pulsing dynamics, when random wiring is applied to a 2D `glider' rule running in a…

Cellular Automata and Lattice Gases · Physics 2021-03-02 Andrew Wuensche , Edward Coxon

Precipitation/dissolution reactions coupled with solute transport are modelled as a cellular automaton in which solute molecules perform a random walk on a regular lattice and react according to a local probabilistic rule. Stationary solid…

comp-gas · Physics 2009-10-28 T. Karapiperis

We study a Life-like cellular automaton rule $B2/S2345$ where a cell in state `0' takes state `1' if it has exactly two neighbors in state `1' and the cell remains in the state `1' if it has between two and five neighbors in state `1.' This…

Pattern Formation and Solitons · Physics 2011-06-16 Genaro J. Martinez , Andrew Adamatzky , Kenichi Morita , Maurice Margenstern

The noise-induced pattern formation in a population dynamical model of three interacting species in the coexistence regime is investigated. A coupled map lattice of Lotka-Volterra equations in the presence of multiplicative noise is used to…

Statistical Mechanics · Physics 2007-05-23 A. Fiasconaro , D. Valenti , B. Spagnolo

Hierarchical structure is an essential part of complexity, important notion relevant for a wide range of applications ranging from biological population dynamics through robotics to social sciences. In this paper we propose a simple…

Populations and Evolution · Quantitative Biology 2015-06-26 Ivan Gotz , Isaak Rubinstein , Eugene Tsvetkov , Boris Zaltzman

Artificial ecosystems provide an additional experimental tool to support laboratory work, field work, and theoretical development in competitive exclusion research. A novel application of a spatiotemporal agent based model is presented…

Populations and Evolution · Quantitative Biology 2023-06-01 John C. Stevenson

Owing to the analogies between the problem of wealth redistribution with taxation in a multi-agent society, we introduce and discuss a kinetic model describing the statistical distributions in time of the sizes of groups of biological…

Populations and Evolution · Quantitative Biology 2023-11-15 Giuseppe Toscani , Mattia Zanella

In recent years the modelling of traffic flow using methods from statistical physics, especially cellular automata models have allowed simulations of large traffic networks faster than real time. In this paper, we study a probabilistic…

Soft Condensed Matter · Physics 2007-05-23 M. E. Larraga , J. A. del Rio

The density classification task is a famous problem in the theory of cellular automata. It is unsolvable for deterministic automata, but recently solutions for stochastic cellular automata have been found. One of them is a set of stochastic…

Cellular Automata and Lattice Gases · Physics 2019-07-22 Markus Redeker

If A=Z/2, then A^Z is a compact abelian group. A `linear cellular automaton' is a shift-commuting endomorphism F of A^Z. If P is a probability measure on A^Z, then F `asymptotically randomizes' P if F^j P converges to the Haar measure as…

Dynamical Systems · Mathematics 2007-05-23 Marcus Pivato

Probabilistic cellular automata are prototypes of non equilibrium critical phenomena. This class of models includes among others the directed percolation problem (Domany Kinzel model) and the dynamical Ising model. The critical properties…

Statistical Mechanics · Physics 2008-02-03 Franco Bagnoli , Paolo Palmerini , Raul Rechtman

Populations interact non-linearly and are influenced by environmental fluctuations. In order to have realistic mathematical models, one needs to take into account that the environmental fluctuations are inherently stochastic. Often,…

Probability · Mathematics 2025-07-29 Alexandru Hening , Siddharth Sabharwal

We describe pattern formation in ecological systems using a version of the classical Lotka-Volterra model characterized by a spatial scale which controls the predator-prey interaction range. Analytical and simulational results show that…

Populations and Evolution · Quantitative Biology 2016-03-02 E. Brigatti , M. Oliva , M. Núñez-López , R. Oliveros-Ramos , J. Benavides

The stochastic discrete space-time model of an immune response on tumor spreading in a two-dimensional square lattice has been developed. The immunity-tumor interactions are described at the cellular level and then transferred into the…

comp-gas · Physics 2007-05-23 Margarita Voitikova

The study of interactions between multiple species in an ecosystem is an active and impactful direction of inquiry. This is true in particular for fragile systems in which even small perturbations of their functional parameters can produce…

Populations and Evolution · Quantitative Biology 2025-01-14 Anca Radulescu , Richard Halpern , Drew Kozlowski , Conor O'Riordan

We consider discrete dynamical systems and lattice models in statistical mechanics from the point of view of their symmetry groups. We describe a C program for symmetry analysis of discrete systems. Among other features, the program…

Mathematical Physics · Physics 2007-10-08 Vladimir V. Kornyak

This work introduces a new problem, named as, affinity classification problem which is a generalization of the density classification problem. To solve this problem, we introduce temporally stochastic cellular automata where two rules are…

Formal Languages and Automata Theory · Computer Science 2022-07-13 Kamalika Bhattacharjee , Subrata Paul , Sukanta Das

We present an individual-based model for two interacting populations diffusing on lattices in which a strong natural selection develops spontaneously. The models combine traditional local predator-prey dynamics with random walks.…

Populations and Evolution · Quantitative Biology 2007-05-23 Monica F. B. Moreira , Marcio P. Dantas , A. T. Costa

We investigate the large population dynamics of a family of stochastic particle systems with three-state cyclic individual behaviour and parameter-dependent transition rates. On short time scales, the dynamics turns out to be approximated…

Probability · Mathematics 2022-05-10 Julien Barré , Bastien Fernandez , Grégoire Panel