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The plant hormone auxin controls many aspects of the development of plants. One striking dynamical feature is the self-organisation of leaf venation patterns which is driven by high levels of auxin within vein cells. The auxin transport is…

Dynamical Systems · Mathematics 2019-12-20 Jan Haskovec , Henrik Jönsson , Lisa Maria Kreusser , Peter Markowich

We present a model for mechanically-induced pattern formation in growing biological tissues and discuss its application to the development of leaf venation networks. Drawing an analogy with phase transitions in solids, we use a phase field…

Soft Condensed Matter · Physics 2010-10-29 F. Corson , H. Henry , M. Adda-Bedia

Dried leaves in nature often exhibit curled and crumpled morphologies, typically attributed to internal strain gradients that produce dome-like shapes. However, the origin of these strain gradients remains poorly understood. Although leaf…

Soft Condensed Matter · Physics 2025-10-29 Kexin Guo , Yafei Zhang , Massimo Paradiso , Yuchen Long , K. Jimmy Hsia , Mingchao Liu

Plant hormone auxin has critical roles in plant growth, dependent on its heterogeneous distribution in plant tissues. Exactly how auxin transport and developmental processes such as growth coordinate to achieve the precise patterns of auxin…

Tissues and Organs · Quantitative Biology 2019-11-14 Henry R. Allen , Mariya Ptashnyk

The plant hormone auxin is fundamental for plant growth, and its spatial distribution in plant tissues is critical for plant morphogenesis. We consider a leading model of the polar auxin flux, and study in full detail the stability of the…

Tissues and Organs · Quantitative Biology 2011-10-25 Chrystel Feller , Jean-Pierre Gabriel , Christian Mazza , Florence Yerly

Experimental data regarding auxin and venation formation exist at both macroscopic and molecular scales, and we attempt to unify them into a comprehensive model for venation formation. We begin with a set of principles to guide an abstract…

Quantitative Methods · Quantitative Biology 2009-05-28 Pavel Dimitrov , Steven W. Zucker

Leaf venation is a pervasive example of a complex biological network, endowing leaves with a transport system and mechanical resilience. Transport networks optimized for efficiency have been shown to be trees, i.e. loopless. However,…

Biological Physics · Physics 2015-05-13 Eleni Katifori , Gergely J. Szöllősi , Marcelo O. Magnasco

The hormone auxin is actively transported throughout plants via protein machineries including the dedicated transporter known as PIN. The associated transport is ordered with nearby cells driving auxin flux in similar directions. Here we…

Tissues and Organs · Quantitative Biology 2016-04-12 Silvia Grigolon , Peter Sollich , Olivier C. Martin

Many processes in eukaryotic cells, including cell motility, rely on the growth of branched actin networks from surfaces. Despite its central role the mechano-chemical coupling mechanisms which guide the growth process are poorly…

Soft Condensed Matter · Physics 2015-06-23 Karin John , Denis Caillerie , Chaouqi Misbah

The rheological properties of biological tissues are core to processes such as cancer metastasis, wound healing and embryo development. The emergence of tissue and organ structures during morphogenesis requires the precise formation of…

Soft Condensed Matter · Physics 2026-03-10 Aidan J. Nicholas , Suzanne M. Fielding

Vascular networks play a key role in the development, function, and survival of many organisms, facilitating transport of nutrients and other critical factors within and between systems. The development of these vessel networks has been…

Tissues and Organs · Quantitative Biology 2022-03-23 Benjamin J. Walker , Adriana T. Dawes

Lumen formation plays an essential role in the morphogenesis of tissues during development. Here we review the physical principles that play a role in the growth and coarsening of lumens. Solute pumping by the cell, hydraulic flows driven…

Soft Condensed Matter · Physics 2021-07-14 Alejandro Torres-Sánchez , Max Kerr Winter , Guillaume Salbreux

Morphogenesis involves complex shape changes of biological tissues. Yet, tissue shape changes depend on tissue rheology, which in turn arises from the interplay of large numbers of cells. Here, we link cell- and tissue-scale mechanics by…

Soft Condensed Matter · Physics 2026-02-27 Shalabh Kumar Anand , Matthias Merkel

Connecting cell behavior to tissue shape and mechanics is a key challenge in the physics of morphogenesis. Cytoskeletal turnover precludes a fixed reference state, and tensions are actively generated independently of strain; so conventional…

Soft Condensed Matter · Physics 2026-05-28 Nikolas H. Claussen , Fridtjof Brauns , Boris I. Shraiman

The innumerable shapes of plant leaves present a challenge to the explanatory power of biophysical theory. A model is needed that can produce these shapes with a small set of parameters. This paper presents a simple model of leaf shape…

Tissues and Organs · Quantitative Biology 2010-04-27 David A. Young

Angiogenesis is the formation of new blood vessels from pre-existing ones in response to chemical signals secreted by, for example, a wound or a tumour. In this paper, we propose a mesoscopic lattice-based model of angiogenesis, in which…

Tissues and Organs · Quantitative Biology 2016-03-02 Fabian Spill , Pilar Guerrero , Tomas Alarcon , Philip K. Maini , Helen M. Byrne

We discuss the characteristics of the patterns of the vascular networks in a mathematical model for angiogenesis. Based on recent in vitro experiments, this mathematical model assumes that the elongation and bifurcation of blood vessels…

Pattern Formation and Solitons · Physics 2021-06-15 Jun Mada , Tetsuji Tokihiro

Actin flow in the cortical cytoskeleton underneath the cell membrane generates mechanical stresses that shape the cell surface. We study this mechanism using a hydrodynamic model of a compressible active gel polymerizing at the membrane and…

Soft Condensed Matter · Physics 2026-05-13 Kristiana Mihali , Dennis Wörthmüller , Pierre Sens

The principles underlying plant development are extended to allow a more molecular mechanism to elaborate the schema by which ground cells differentiate into vascular cells. Biophysical considerations dictate that linear dynamics are not…

Quantitative Methods · Quantitative Biology 2009-05-29 Pavel Dimitrov , Steven W. Zucker

Cellular rearrangements, as primary sources of tissue fluidization, facilitate topological transitions during tissue morphogenesis. We study the role of intrinsic cell properties such as cell polarity and cell-cell adhesion in shaping…

Biological Physics · Physics 2024-03-11 Richard D. J. G. Ho , Stig Ove Bøe , Dag Kristian Dysthe , Luiza Angheluta
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