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Synthetic biology is a recent area of biological engineering, whose aim is to provide cells with novel functionalities. A number of important results regarding the development of control circuits in synthetic biology have been achieved…

Systems and Control · Electrical Eng. & Systems 2024-11-11 Antón Pardo , Sandra Díaz Seoane , Dorin A. Ionescu , Antonis Papachristodoulou , Alejandro F. Villaverde

The computing education community has a rich history of pedagogical innovation designed to support students in introductory courses, and to support teachers in facilitating student learning. Very recent advances in artificial intelligence…

This paper introduces Sparklen, a statistical learning toolkit for Hawkes processes in Python, designed to bring together efficiency and ease of use. The purpose of this package is to provide the Python community with a complete suite of…

Methodology · Statistics 2025-03-31 Romain Edmond Lacoste

We describe some "unrestricted" algorithms which are useful for the computation of elementary and special functions when the precision required is not known in advance. Several general classes of algorithms are identified and illustrated by…

Numerical Analysis · Mathematics 2010-04-22 Richard P. Brent

Circuit design for quantum machine learning remains a formidable challenge. Inspired by the applications of tensor networks across different fields and their novel presence in the classical machine learning context, one proposed method to…

Hybrid quantum-classical machine learning represents a frontier in computational research, combining the potential advantages of quantum computing with established classical optimization techniques. PennyLane provides a Python framework…

Software Engineering · Computer Science 2025-11-20 Sidney Shapiro

Artificial intelligence (AI) techniques are widely applied in the life sciences. However, applying innovative AI techniques to understand and deconvolute biological complexity is hindered by the learning curve for life science scientists to…

Artificial Intelligence · Computer Science 2024-03-28 Nisha Pillai , Athish Ram Das , Moses Ayoola , Ganga Gireesan , Bindu Nanduri , Mahalingam Ramkumar

Recently, computational modelling became a very important research tool that enables us to study problems that for decades evaded scientific analysis. Evolutionary systems are certainly examples of such problems: they are composed of many…

Populations and Evolution · Quantitative Biology 2009-07-04 Adam Lipowski , Dorota Lipowska

Conan is a C++ library created for the accurate and efficient modelling, inference and analysis of complex networks. It implements the generation and modification of graphs according to several published models, as well as the unexpensive…

Quantitative Methods · Quantitative Biology 2010-12-02 Ricardo Honorato-Zimmer , Bryan Reynaert , Ignacio Vergara , Tomas Perez-Acle

Incorporating nonlinearity into quantum machine learning is essential for learning a complicated input-output mapping. We here propose quantum algorithms for nonlinear regression, where nonlinearity is introduced with feature maps when…

Quantum Physics · Physics 2018-08-30 Dan-Bo Zhang , Shi-Liang Zhu , Z. D. Wang

Due to the interdisciplinary nature of complex systems as a field, students studying complex systems at University level have diverse disciplinary backgrounds. This brings challenges (e.g. wide range of computer programming skills) but also…

Active learning comprises many varied techniques that engage students actively in the construction of their understanding. Because of this variation, different active learning techniques may be best suited to achieving different learning…

General Economics · Economics 2025-08-11 Sarah A. Jacobson , Luyao Zhang , Jiasheng Zhu

Nonlinear interpolants have been shown useful for the verification of programs and hybrid systems in contexts of theorem proving, model checking, abstract interpretation, etc. The underlying synthesis problem, however, is challenging and…

Logic in Computer Science · Computer Science 2019-08-29 Mingshuai Chen , Jian Wang , Jie An , Bohua Zhan , Deepak Kapur , Naijun Zhan

Non-linear state estimation and some related topics, like parametric estimation, fault diagnosis, and perturbation attenuation, are tackled here via a new methodology in numerical differentiation. The corresponding basic system theoretic…

Computational Engineering, Finance, and Science · Computer Science 2008-11-06 Michel Fliess , Cédric Join , Hebertt Sira-Ramirez

Using transformers over large generated datasets, we train models to learn mathematical properties of differential systems, such as local stability, behavior at infinity and controllability. We achieve near perfect prediction of qualitative…

Machine Learning · Computer Science 2021-03-22 François Charton , Amaury Hayat , Guillaume Lample

We consider two classes of computations which admit taking linear combinations of execution runs: probabilistic sampling and generalized animation. We argue that the task of program learning should be more tractable for these architectures…

Logic in Computer Science · Computer Science 2015-12-17 Michael Bukatin , Steve Matthews

Linear mixture models have proven very useful in a plethora of applications, e.g., topic modeling, clustering, and source separation. As a critical aspect of the linear mixture models, identifiability of the model parameters is…

Machine Learning · Computer Science 2021-02-24 Bo Yang , Xiao Fu , Nicholas D. Sidiropoulos , Kejun Huang

The focus of this thesis is on the applications of nonlinear dynamical systems in bioengineering which are mainly used in large-scale and generally categorised into two groups: (1) dynamical systems from biology (2) dynamical systems for…

Neural and Evolutionary Computing · Computer Science 2021-08-19 Hamid Soleimani

Deep learning has enabled major advances in the fields of computer vision, natural language processing, and multimedia among many others. Developing a deep learning system is arduous and complex, as it involves constructing neural network…

Machine Learning · Computer Science 2017-08-04 Hao Dong , Akara Supratak , Luo Mai , Fangde Liu , Axel Oehmichen , Simiao Yu , Yike Guo

In this article, we give a brief overview of the current state and future potential of symbolic computation within the Python statistical modeling and machine learning community. We detail the use of miniKanren as an underlying framework…

Programming Languages · Computer Science 2020-06-01 Brandon T. Willard