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Python implementation of permutations is presented. Three classes are introduced: Perm for permutations, Group for permutation groups, and PermError to report any errors for both classes. The class Perm is based on Python dictionaries and…

Mathematical Software · Computer Science 2014-06-17 Andrzej Kapanowski

Graph representations of programs are commonly a central element of machine learning for code research. We introduce an open source Python library python_graphs that applies static analysis to construct graph representations of Python…

Machine Learning · Computer Science 2022-08-17 David Bieber , Kensen Shi , Petros Maniatis , Charles Sutton , Vincent Hellendoorn , Daniel Johnson , Daniel Tarlow

Mathematical modelling allows us to concisely describe fundamental principles in biology. Analysis of models can help to both explain known phenomena, and predict the existence of new, unseen behaviours. Model analysis is often a complex…

Quantitative Methods · Quantitative Biology 2020-08-13 Mark Blyth , Ludovic Renson , Lucia Marucci

Predicting long-term outcomes of interventions is necessary for educational and social policy-making processes that might widely influence our society for the long-term. However, performing such predictions based on data from large-scale…

Applications · Statistics 2018-01-04 Hyemin Han , Kangwook Lee , Firat Soylu

Recent releases of open-source research codes and solvers for numerically solving partial differential equations in Python present a great opportunity for educators to integrate these codes into the classroom in a variety of ways. The ease…

Physics Education · Physics 2020-08-27 Pavan Inguva , Vijesh J. Bhute , Thomas N. H. Cheng , Pierre J. Walker

Many STEM concepts pose significant learning challenges to students due to their inherent complexity and abstract nature. Visualizing complex problems through animations can significantly enhance learning outcomes. However, the creation of…

Human-Computer Interaction · Computer Science 2025-10-03 Christina Zhang

Biophysics is a subject that is spread over many disciplines and transcends the skills and knowledge of the individual student. This makes it challenging both to teach and to learn. Educational materials are described to aid in teaching…

Physics Education · Physics 2015-06-15 J. M. Deutsch

Background: The study of genome-scale metabolic models and their underlying networks is one of the most important fields in systems biology. The complexity of these models and their description makes the use of computational tools an…

Molecular Networks · Quantitative Biology 2012-12-03 D. Gamermann , A. Montagud , R. A. Jaime Infante , J. Triana , P. F. de Córdoba , J. F. Urchueguía

Since Lorenz's seminal work on a simplified weather model, the numerical analysis of nonlinear dynamical systems has become one of the main subjects of research in physics. Despite of that, there remains a need for accessible, efficient,…

Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensible scientific programming platform that offered the perfect…

Quantitative Methods · Quantitative Biology 2008-03-14 Julius B. Lucks

Computation is a central aspect of modern science and engineering work, and yet, computational instruction has yet to fully pervade university STEM curricula. In physics, we have begun to integrate computation into our courses in a variety…

Physics Education · Physics 2017-09-19 Marcos. D. Caballero , Michael J. Obsniuk , Paul W. Irving

In these lecture notes, a selection of frequently required statistical tools will be introduced and illustrated. They allow to post-process data that stem from, e.g., large-scale numerical simulations (aka sequence of random experiments).…

Data Analysis, Statistics and Probability · Physics 2012-07-26 O. Melchert

We continuously interact with computerized systems to achieve goals and perform tasks in our personal and professional lives. Therefore, the ability to program such systems is a skill needed by everyone. Consequently, computational thinking…

Human-Computer Interaction · Computer Science 2021-12-07 Christopher Pyles , Francois van Schalkwyk , Gerard J. Gorman , Marijan Beg , Lee Stott , Nir Levy , Ran Gilad-Bachrach

The advent of modern data processing has led to an increasing tendency towards interdisciplinarity, which frequently involves the importation of different technical approaches. Consequently, there is an urgent need for a unified data…

Machine Learning · Computer Science 2024-06-04 Chen Zhang , Lecheng Jia , Wei Zhang , Ning Wen

We describe a way to introduce physics high school students with no background in programming to computational problem-solving experiences. Our approach builds on the great strides made by the Modeling Instruction reform curriculum. This…

Simulation-driven development of intelligent machines benefits from artificial terrains with controllable, well-defined characteristics. However, most existing tools for terrain generation focus on artist-driven workflows and visual…

Computational Engineering, Finance, and Science · Computer Science 2025-06-25 Erik Wallin

This paper outlines our ideas on how to teach linear algebra in a mechanized mathematical environment, and discusses some of our reasons for thinking that this is a better way to teach linear algebra than the ``old fashioned way''. We…

History and Overview · Mathematics 2023-06-02 Robert M. Corless , David J. Jeffrey , Azar Shakoori

We describe how Python can be leveraged to streamline the curation, modelling and dissemination of drug discovery data as well as the development of innovative, freely available tools for the related scientific community. We look at various…

Other Computer Science · Computer Science 2016-07-05 Michał Nowotka , George Papadatos , Mark Davies , Nathan Dedman , Anne Hersey

We examine several currently used techniques for visualizing complex-valued functions applied to modular forms. We plot several examples and study the benefits and limitations of each technique. We then introduce a method of visualization…

Graphics · Computer Science 2025-07-28 David Lowry-Duda

This work describes the TrueLearn Python library, which contains a family of online learning Bayesian models for building educational (or more generally, informational) recommendation systems. This family of models was designed following…

Information Retrieval · Computer Science 2023-09-22 Yuxiang Qiu , Karim Djemili , Denis Elezi , Aaneel Shalman , María Pérez-Ortiz , Sahan Bulathwela
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