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The Kuramoto model is a commonly used mathematical model for studying synchronized oscillations in biological systems, with its temporal synchronization properties well studied. However, the properties of spatial waves have received less…

Pattern Formation and Solitons · Physics 2023-04-13 Yi Yu

Astrocytes play a central role in inducing concerted phase synchronized neural-wave patterns inside the brain. In this article, we demonstrate that injected radio-frequency signal in underlying heavy metal layer of spin-orbit torque…

Emerging Technologies · Computer Science 2021-09-17 Umang Garg , Kezhou Yang , Abhronil Sengupta

MicroRNAs are extensively known for post-transcriptional gene regulation and pattern formation in the embryonic developmental stage. We explore the origin of these spatio-temporal patterns mathematically, considering three different motifs…

Quantitative Methods · Quantitative Biology 2023-07-19 Priya Chakraborty , Sayantari Ghosh

Living materials adapt their shape to signals from the environment, yet the impact of shape changes on signal processing and associated feedback dynamics remain unclear. We find that droplets with signal-responsive interfacial tensions…

Soft Condensed Matter · Physics 2026-01-27 Tim Dullweber , Roman Belousov , Camilla Autorino , Nicoletta Petridou , Anna Erzberger

The migration of cells is relevant for processes such as morphogenesis, wound healing, and invasion of cancer cells. In order to move, single cells deform cyclically. However, it is not understood how these shape oscillations influence…

Biological Physics · Physics 2019-09-04 Matteo Campo , Simon K. Schnyder , John J. Molina , Thomas Speck , Ryoichi Yamamoto

We propose a new mechanism for pattern formation based on the global alternation of two dynamics neither of which exhibits patterns. When driven by either one of the separate dynamics, the system goes to a spatially homogeneous state…

Statistical Mechanics · Physics 2009-11-07 J. Buceta , Katja Lindenberg , J. M. R. Parrondo

We consider the orientational instabilities, both homogeneous and spatially periodic, developing in a nematic liquid crystal under rectilinear oscillatory Couette flow for director alignment perpendicular to the flow plane. Using numerical…

Soft Condensed Matter · Physics 2007-05-23 O. S. Tarasov , A. P. Krekhov , L. Kramer

In this paper, we present a spatial version of phytoplankton-zooplankton model that includes some important factors such as external periodic forces, noise, and diffusion processes. The spatially extended phytoplankton-zooplankton system is…

Populations and Evolution · Quantitative Biology 2008-05-23 Quan-Xing Liu , Bai-Lian Li , Zhen Jin

Embryonic development involves pattern formation characterized by the emergence of spatially localized domains characterized by distinct cell fates resulting from differential gene expression. The boundaries demarcating these domains are…

Tissues and Organs · Quantitative Biology 2024-06-11 Chandrashekar Kuyyamudi , Shakti N. Menon , Sitabhra Sinha

Solid substrates can be endued with self-organized regular stripe patterns of nanoscopic lengthscale by Langmuir-Blodgett transfer of organic monolayers. Here we consider the effect of periodically prepatterned substrates on this process of…

Pattern Formation and Solitons · Physics 2015-05-20 Michael H. Köpf , Svetlana V. Gurevich , Rudolf Friedrich

Spatially resolved genetic data is increasingly used to reconstruct the migrational history of species. To assist such inference, we study, by means of simulations and analytical methods, the dynamics of neutral gene frequencies in a…

Populations and Evolution · Quantitative Biology 2008-01-15 Oskar Hallatschek , David R. Nelson

It has been hypothesized that Gamma cortical oscillations play important roles in numerous cognitive processes and may involve psychiatric conditions including anxiety, schizophrenia, and autism. Gamma rhythms are commonly observed in many…

Neurons and Cognition · Quantitative Biology 2021-03-11 Fereshteh Arab , Sareh Rostami , Mohammad Dehghani-Habibabadi , Vahid Salari , Mir-Shahram Safari

Biological rhythms are generated by pacemaker organs, such as the heart pacemaker organ (the sinoatrial node) and the master clock of the circadian rhythms (the suprachiasmatic nucleus), which are composed of a network of autonomously…

Cell Behavior · Quantitative Biology 2016-08-23 Hiroshi Kori , Yoji Kawamura , Naoki Masuda

Spontaneous cortical population activity exhibits a multitude of oscillatory patterns, which often display synchrony during slow-wave sleep or under certain anesthetics and stay asynchronous during quiet wakefulness. The mechanisms behind…

Neurons and Cognition · Quantitative Biology 2018-06-20 Rodrigo F. O. Pena , Michael A. Zaks , Antonio C. Roque

Lateral inhibition resulting from a double-negative feedback loop underlies the assignment of different fates to cells in many developmental processes. Previous studies have shown that the presence of time delays in models of lateral…

Cell Behavior · Quantitative Biology 2015-05-13 Hiroshi Momiji , Nicholas A. M. Monk

Overlapping fish-scale architectures are among nature's most distinctive surface adaptations, combining protection, contact regulation, hydrodynamics, optical and directional mechanical response within a thin textured integument. Here, we…

Chaotic Dynamics · Physics 2026-04-16 Omid Bateniparvar , Farzan Farahmand , Ranajay Ghosh

Boundary-induced pattern formation from a spatially uniform state is investigated using one-dimensional reaction-diffusion equations. The temporal oscillation is successively transformed into a spatially periodic pattern, triggered by…

Pattern Formation and Solitons · Physics 2017-02-01 Takahiro Kohsokabe , Kunihiko Kaneko

Chemo-mechanical waves on active deformable surfaces are a key component for many vital cellular functions. In particular, these waves play a major role in force generation and long-range signal transmission in cells that dynamically change…

Spatial organisation is a hallmark of all living cells, and recreating it in model systems is a necessary step in the creation of synthetic cells. It is therefore of both fundamental and practical interest to better understand the basic…

Biological Physics · Physics 2017-12-19 Jaime Agudo-Canalejo , Ramin Golestanian

Spatial systems with heterogeneities are ubiquitous in nature, from precipitation, temperature and soil gradients controlling vegetation growth to morphogen gradients controlling gene expression in embryos. Such systems, generally described…

Dynamical Systems · Mathematics 2023-05-10 Denis D. Patterson , Simon A. Levin , A. Carla Staver , Jonathan D. Touboul