English

Understanding Multistationarity of Fully Open Reaction Networks

Molecular Networks 2025-11-11 v4

Abstract

This work addresses multistationarity of fully open reaction networks equipped with mass action kinetics. We improve upon the existing results relating existence of positive feedback loops in a reaction network and multistationarity; and we provide a novel deterministic operation to generate new non-multistationary networks. This is interesting because while there were many operations to create infinitely many new multistationary networks from a multistationary example, this is the first such operation for the non-multistationary counterpart. Such tools for the generation of example networks have a use-case in the application of data science to reaction network theory. We demonstrate this by using the new data, along with a novel graph representation of reaction networks that is unique up to a permutation on the name of species of the network, to train a graph attention neural network model to predict multistationarity of reaction networks. This is the first time machine learning tools are used for studying classification problems of reaction networks.

Keywords

Cite

@article{arxiv.2407.01760,
  title  = {Understanding Multistationarity of Fully Open Reaction Networks},
  author = {Shenghao Yao and AmirHosein Sadeghimanesh and Matthew England},
  journal= {arXiv preprint arXiv:2407.01760},
  year   = {2025}
}

Comments

36 pages, 4 Figures, 2 Tables, the dataset and code related to this manuscript is available at the Zenodo link given inside the paper