Transition Path Theory from Biased Simulations
Abstract
Transition Path Theory (TPT) provides a rigorous framework to investigate the dynamics of rare thermally activated transitions. In this theory, a central role is played by the forward committor function q^+(x), which provides the ideal reaction coordinate. Furthermore, the reactive dynamics and kinetics are fully characterized in terms of two time-independent scalar and vector distributions. In this work, we develop a scheme which enables all these ingredients of TPT to be efficiently computed using the short non-equilibrium trajectories generated by means of a specific combination of enhanced path sampling techniques. In particular, first, we further extend the recently introduced Self-Consistent Path Sampling (SCPS) algorithm in order to compute the committor q^+(x). Next, we show how this result can be exploited in order to define efficient algorithms which enable us to directly sample the transition path ensemble.
Cite
@article{arxiv.1807.06418,
title = {Transition Path Theory from Biased Simulations},
author = {G. Bartolucci and S. Orioli and P. Faccioli},
journal= {arXiv preprint arXiv:1807.06418},
year = {2018}
}
Comments
Version accepted for publication in J. Chem. Phys