Motivation: TiQuant is a modular software tool for efficient quantification of biological tissues based on volume data obtained by biomedical image modalities. It includes a number of versatile image and volume processing chains tailored to the analysis of different tissue types which have been experimentally verified. TiQuant implements a novel method for the reconstruction of three-dimensional surfaces of biological systems, data that often cannot be obtained experimentally but which is of utmost importance for tissue modelling in systems biology. Availability: TiQuant is freely available for non-commercial use at msysbio.com/tiquant. Windows, OSX and Linux are supported.
@article{arxiv.1410.4598,
title = {TiQuant: Software for tissue analysis, quantification and surface reconstruction},
author = {Adrian Friebel and Johannes Neitsch and Tim Johann and Seddik Hammad and Jan G. Hengstler and Dirk Drasdo and Stefan Hoehme},
journal= {arXiv preprint arXiv:1410.4598},
year = {2014}
}