English

Tight Bounds for Active Self-Assembly Using an Insertion Primitive

Formal Languages and Automata Theory 2015-10-29 v5

Abstract

We prove two tight bounds on the behavior of a model of self-assembling particles introduced by Dabby and Chen (SODA 2013), called insertion systems, where monomers insert themselves into the middle of a growing linear polymer. First, we prove that the expressive power of these systems is equal to context-free grammars, answering a question posed by Dabby and Chen. Second, we prove that systems of kk monomer types can deterministically construct polymers of length n=2Θ(k3/2)n = 2^{\Theta(k^{3/2})} in O(log5/3(n))O(\log^{5/3}(n)) expected time, and that this is optimal in both the number of monomer types and expected time.

Cite

@article{arxiv.1401.0359,
  title  = {Tight Bounds for Active Self-Assembly Using an Insertion Primitive},
  author = {Benjamin Hescott and Caleb Malchik and Andrew Winslow},
  journal= {arXiv preprint arXiv:1401.0359},
  year   = {2015}
}

Comments

To appear in Algorithmica. An abstract (12-page) version of this paper appeared in the proceedings of ESA 2014

R2 v1 2026-06-22T02:38:03.545Z