Tight Bounds for Active Self-Assembly Using an Insertion Primitive
Formal Languages and Automata Theory
2015-10-29 v5
Abstract
We prove two tight bounds on the behavior of a model of self-assembling particles introduced by Dabby and Chen (SODA 2013), called insertion systems, where monomers insert themselves into the middle of a growing linear polymer. First, we prove that the expressive power of these systems is equal to context-free grammars, answering a question posed by Dabby and Chen. Second, we prove that systems of monomer types can deterministically construct polymers of length in expected time, and that this is optimal in both the number of monomer types and expected time.
Cite
@article{arxiv.1401.0359,
title = {Tight Bounds for Active Self-Assembly Using an Insertion Primitive},
author = {Benjamin Hescott and Caleb Malchik and Andrew Winslow},
journal= {arXiv preprint arXiv:1401.0359},
year = {2015}
}
Comments
To appear in Algorithmica. An abstract (12-page) version of this paper appeared in the proceedings of ESA 2014