Symmetries of Electrostatic Interaction between DNA Molecules
Abstract
We study a model for pair interaction of DNA molecules generated by the discrete dipole moments of base-pairs and the charges of phosphate groups, and find noncommutative group of eighth order of symmetries that leave invariant. We classify the minima using group and employ numerical methods for finding them. The minima may correspond to several cholesteric phases, as well as phases formed by cross-like conformations of molecules at an angle close to , "snowflake phase". The results depend on the effective charge of the phosphate group which can be modified by the polycations or the ions of metals. The snowflake phase could exist for above the threshold . Below there could be several cholesteric phases. Close to the snowflake phase could change into the cholesteric one at constant distance between adjacent molecules.
Keywords
Cite
@article{arxiv.0707.1405,
title = {Symmetries of Electrostatic Interaction between DNA Molecules},
author = {Voislav Golo and Efim Kats and Yuriy Volkov},
journal= {arXiv preprint arXiv:0707.1405},
year = {2009}
}
Comments
13 pages, 4 figures