English

Symmetries of Electrostatic Interaction between DNA Molecules

Soft Condensed Matter 2009-11-13 v1

Abstract

We study a model for pair interaction UU of DNA molecules generated by the discrete dipole moments of base-pairs and the charges of phosphate groups, and find noncommutative group of eighth order S{\cal S} of symmetries that leave UU invariant. We classify the minima using group S{\cal S} and employ numerical methods for finding them. The minima may correspond to several cholesteric phases, as well as phases formed by cross-like conformations of molecules at an angle close to 90o\rm{90}^{o}, "snowflake phase". The results depend on the effective charge QQ of the phosphate group which can be modified by the polycations or the ions of metals. The snowflake phase could exist for QQ above the threshold QCQ_C. Below QCQ_C there could be several cholesteric phases. Close to QCQ_C the snowflake phase could change into the cholesteric one at constant distance between adjacent molecules.

Keywords

Cite

@article{arxiv.0707.1405,
  title  = {Symmetries of Electrostatic Interaction between DNA Molecules},
  author = {Voislav Golo and Efim Kats and Yuriy Volkov},
  journal= {arXiv preprint arXiv:0707.1405},
  year   = {2009}
}

Comments

13 pages, 4 figures

R2 v1 2026-06-21T08:56:46.129Z