Suffix Arrays for Spaced-SNP Databases
Data Structures and Algorithms
2014-07-02 v1
Authors:
Travis Gagie
Abstract
Single-nucleotide polymorphisms (SNPs) account for most variations between human genomes. We show how, if the genomes in a database differ only by a reasonable number of SNPs and the substrings between those SNPs are unique, then we can store a fast compressed suffix array for that database.
Cite
@article{arxiv.1407.0114,
title = {Suffix Arrays for Spaced-SNP Databases},
author = {Travis Gagie},
journal= {arXiv preprint arXiv:1407.0114},
year = {2014}
}
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