English

Structural motifs of biomolecules

Biomolecules 2009-11-13 v1

Abstract

Biomolecular structures are assemblies of emergent anisotropic building modules such as uniaxial helices or biaxial strands. We provide an approach to understanding a marginally compact phase of matter that is occupied by proteins and DNA. This phase, which is in some respects analogous to the liquid crystal phase for chain molecules, stabilizes a range of shapes that can be obtained by sequence-independent interactions occurring intra- and intermolecularly between polymeric molecules. We present a singularityfree self-interaction for a tube in the continuum limit and show that this results in the tube being positioned in the marginally compact phase. Our work provides a unified framework for understanding the building blocks of biomolecules.

Keywords

Cite

@article{arxiv.0712.2398,
  title  = {Structural motifs of biomolecules},
  author = {Jayanth R. Banavar and Trinh X. Hoang and John H. Maddocks and Amos Maritan and Chiara Poletto and Andrzej Stasiak and Antonio Trovato},
  journal= {arXiv preprint arXiv:0712.2398},
  year   = {2009}
}

Comments

13 pages, 5 figures

R2 v1 2026-06-21T09:54:12.499Z