Structural motifs of biomolecules
Abstract
Biomolecular structures are assemblies of emergent anisotropic building modules such as uniaxial helices or biaxial strands. We provide an approach to understanding a marginally compact phase of matter that is occupied by proteins and DNA. This phase, which is in some respects analogous to the liquid crystal phase for chain molecules, stabilizes a range of shapes that can be obtained by sequence-independent interactions occurring intra- and intermolecularly between polymeric molecules. We present a singularityfree self-interaction for a tube in the continuum limit and show that this results in the tube being positioned in the marginally compact phase. Our work provides a unified framework for understanding the building blocks of biomolecules.
Cite
@article{arxiv.0712.2398,
title = {Structural motifs of biomolecules},
author = {Jayanth R. Banavar and Trinh X. Hoang and John H. Maddocks and Amos Maritan and Chiara Poletto and Andrzej Stasiak and Antonio Trovato},
journal= {arXiv preprint arXiv:0712.2398},
year = {2009}
}
Comments
13 pages, 5 figures