English

Stochastic gene expression with delay

Molecular Networks 2014-08-08 v2 Probability

Abstract

The expression of genes usually follows a two-step procedure. First, a gene (encoded in the genome) is transcribed resulting in a strand of (messenger) RNA. Afterwards, the RNA is translated into protein. Classically, this gene expression is modeled using a Markov jump process including activation and deactivation of the gene, transcription and translation rates together with degradation of RNA and protein. We extend this model by adding delays (with arbitrary distributions) to transcription and translation. Such delays can e.g.\ mean that RNA has to be transported to a different part of a cell before translation can be initiated. Already in the classical model, production of RNA and protein come in bursts by activation and deactivation of the gene, resulting in a large variance of the number of RNA and proteins in equilibrium. We derive precise formulas for this second-order structure with the model including delay in equilibrium. As a general fact, the delay decreases the variance of the number of RNA and proteins.

Keywords

Cite

@article{arxiv.1305.6635,
  title  = {Stochastic gene expression with delay},
  author = {Martin Jansen and Peter Pfaffelhuber},
  journal= {arXiv preprint arXiv:1305.6635},
  year   = {2014}
}

Comments

14 pages

R2 v1 2026-06-22T00:24:09.915Z