ssys: Exact algebraic recasting of ODE models into S-system or GMA form
Quantitative Methods
2026-07-06 v1
Abstract
ssys is a Python package for exact algebraic recasting of supported ODE models into S-system or Generalized Mass Action form. It reads Antimony and SBML models, introduces auxiliary variables through symbolic lifting, and validates transformed systems using symbolic, numerical, and trajectory-based checks. The package provides command-line workflows, notebook generation, and benchmark evidence across curated models and BioModels examples, making classical power-law recasting practical for reproducible systems biology modeling.
Keywords
Cite
@article{arxiv.2607.05607,
title = {ssys: Exact algebraic recasting of ODE models into S-system or GMA form},
author = {William S. Hlavacek},
journal= {arXiv preprint arXiv:2607.05607},
year = {2026}
}
Comments
7 pages