English

Simulating 3-symbol Turing machines with SIMD||DNA

Emerging Technologies 2022-02-17 v5 Molecular Networks

Abstract

SIMD||DNA is a model of DNA strand displacement allowing parallel in-memory computation on DNA storage. We show how to simulate an arbitrary 3-symbol space-bounded Turing machine with a SIMD||DNA program, giving a more direct and efficient route to general-purpose information manipulation on DNA storage than the Rule 110 simulation of [Wang, Chalk, Soloveichik, DNA 2019]. We also develop software that can simulate SIMD||DNA programs and produce SVG figures.

Cite

@article{arxiv.2105.08559,
  title  = {Simulating 3-symbol Turing machines with SIMD||DNA},
  author = {David Doty and Aaron Ong},
  journal= {arXiv preprint arXiv:2105.08559},
  year   = {2022}
}
R2 v1 2026-06-24T02:13:37.225Z