English

Scaling regimes for wormlike chains confined to cylindrical surfaces under tension

Soft Condensed Matter 2023-11-28 v2

Abstract

We compute the free energy of confinement F{\cal{F}} for a wormlike chain (WLC), with persistence length lpl_p, that is confined to the surface of a cylinder of radius RR under an external tension ff using a mean field variational approach. For long chains, we analytically determine the behavior of the chain in a variety of regimes, which are demarcated by the interplay of lpl_p, the Odijk deflection length (ld=(R2lp)1/3l_d=(R^2l_p)^{1/3}), and the Pincus length (lf=kBT/fl_f = {k_BT}/{f}, with kBTk_BT being the thermal energy). The theory accurately reproduces the Odijk scaling for strongly confined chains at f=0f=0, with FLlp1/3R2/3{\cal{F}}\sim Ll_p^{-1/3}R^{-2/3}. For moderate values of ff, the Odijk scaling is discernible only when lpR{l_p}\gg R for strongly confined chains. Confinement does not significantly alter the scaling of the mean extension for sufficiently high tension. The theory is used to estimate unwrapping forces for DNA from nucleosomes.

Keywords

Cite

@article{arxiv.2308.14162,
  title  = {Scaling regimes for wormlike chains confined to cylindrical surfaces under tension},
  author = {Greg Morrison and D. Thirumalai},
  journal= {arXiv preprint arXiv:2308.14162},
  year   = {2023}
}

Comments

17 pages, 4 figures