English

Scalable Quantum Molecular Generation via GPU-Accelerated Tensor-Network Simulation

Quantum Physics 2026-04-16 v1

Abstract

We propose Scalable Quantum Molecular Generation (SQMG), a variational quantum-circuit for sampling molecular graphs using chemical priors on atoms and bonds. SQMG assigns a fixed 3-qubit register to each heavy atom and reuses a single 2-qubit bond register to generate bonds sequentially, yielding an ''atom no-reuse, bond reuse'' architecture with linear qubit scaling. Measurement results are mapped to molecular graphs via lightweight classical decoding with structural constraints. In CUDA-Q, we benchmark the state-vector simulation (CPU/GPU) and the tensor-network simulation (GPU). At N=8N=8 heavy atoms, the state-vector simulator (GPU) and the tensor-network simulator (GPU) achieve speeds of up to 4.5×1044.5\times 10^{4} and 2.2×1032.2\times 10^{3} over the state-vector (CPU) baseline, respectively. Crucially, tensor-network simulation extends exact simulation to N=40N=40 heavy atoms, where state-vector methods become memory-limited. For training, Bayesian optimization outperforms COBYLA on a Validity×\timesUniqueness objective, and the same architecture supports \textit{de novo} generation, scaffold decoration, and linker design. Overall, SQMG provides a scalable, reproducible testbed for evaluating accelerated tensor-network simulation and future quantum molecular generation algorithms.

Keywords

Cite

@article{arxiv.2604.13877,
  title  = {Scalable Quantum Molecular Generation via GPU-Accelerated Tensor-Network Simulation},
  author = {Yu-Cheng Xiao and Jen-Yu Chang and Tzu-Ling Kuo and Aninda Astuti and Shu-Chi Wu and Ka-Lok Ng and Yun-Yuan Wang and Yu-Ze Chen and Nan-Yow Chen and Tai-Yu Li},
  journal= {arXiv preprint arXiv:2604.13877},
  year   = {2026}
}
R2 v1 2026-07-01T12:10:46.339Z