Scalable Quantum Molecular Generation via GPU-Accelerated Tensor-Network Simulation
Abstract
We propose Scalable Quantum Molecular Generation (SQMG), a variational quantum-circuit for sampling molecular graphs using chemical priors on atoms and bonds. SQMG assigns a fixed 3-qubit register to each heavy atom and reuses a single 2-qubit bond register to generate bonds sequentially, yielding an ''atom no-reuse, bond reuse'' architecture with linear qubit scaling. Measurement results are mapped to molecular graphs via lightweight classical decoding with structural constraints. In CUDA-Q, we benchmark the state-vector simulation (CPU/GPU) and the tensor-network simulation (GPU). At heavy atoms, the state-vector simulator (GPU) and the tensor-network simulator (GPU) achieve speeds of up to and over the state-vector (CPU) baseline, respectively. Crucially, tensor-network simulation extends exact simulation to heavy atoms, where state-vector methods become memory-limited. For training, Bayesian optimization outperforms COBYLA on a ValidityUniqueness objective, and the same architecture supports \textit{de novo} generation, scaffold decoration, and linker design. Overall, SQMG provides a scalable, reproducible testbed for evaluating accelerated tensor-network simulation and future quantum molecular generation algorithms.
Cite
@article{arxiv.2604.13877,
title = {Scalable Quantum Molecular Generation via GPU-Accelerated Tensor-Network Simulation},
author = {Yu-Cheng Xiao and Jen-Yu Chang and Tzu-Ling Kuo and Aninda Astuti and Shu-Chi Wu and Ka-Lok Ng and Yun-Yuan Wang and Yu-Ze Chen and Nan-Yow Chen and Tai-Yu Li},
journal= {arXiv preprint arXiv:2604.13877},
year = {2026}
}