English

Sampling molecular conformers in solution with quantum mechanical accuracy at a nearly molecular mechanics cost

Computational Physics 2017-04-21 v1

Abstract

We introduce a method to evaluate the relative populations of different conformers of molecular species in solution, aiming at quantum mechanical accuracy, while keeping the computational cost at a nearly molecular-mechanics level. This goal is achieved by combining long classical molecular-dynamics simulations to sample the free-energy landscape of the system, advanced clustering techniques to identify the most relevant conformers, and thermodynamic perturbation theory to correct the resulting populations, using quantum-mechanical energies from density-functional theory. A quantitative criterion for assessing the accuracy thus achieved is proposed. The resulting methodology is demonstrated in the specific case of cyanin (cyanidin-3-glucoside) in water solution.

Keywords

Cite

@article{arxiv.1704.06144,
  title  = {Sampling molecular conformers in solution with quantum mechanical accuracy at a nearly molecular mechanics cost},
  author = {Marta Rosa and Marco Micciarelli and Alessandro Laio and Stefano Baroni},
  journal= {arXiv preprint arXiv:1704.06144},
  year   = {2017}
}

Comments

2 figures