English

RNA, local moves on plane trees, and transpositions on tableaux

Combinatorics 2017-10-24 v4

Abstract

We define a collection of functions sis_i on the set of plane trees (or standard Young tableaux). The functions are adapted from transpositions in the representation theory of the symmetric group and almost form a group action. They were motivated by local moves\textit{local moves} in combinatorial biology, which are maps that represent a certain unfolding and refolding of RNA strands. One main result of this study identifies a subset of local moves that we call sis_i-local moves, and proves that sis_i-local moves correspond to the maps sis_i acting on standard Young tableaux. We also prove that the graph of sis_i-local moves is a connected, graded poset with unique minimal and maximal elements. We then extend this discussion to functions siCs_i^C that mimic reflections in the Weyl group of type CC. The corresponding graph is no longer connected, but we prove it has two connected components, one of symmetric and the other of asymmetric plane trees. We give open questions and possible biological interpretations.

Keywords

Cite

@article{arxiv.1411.3056,
  title  = {RNA, local moves on plane trees, and transpositions on tableaux},
  author = {Laura Seegerer and Jennifer Tripp and Julianna Tymoczko and Judy Wang},
  journal= {arXiv preprint arXiv:1411.3056},
  year   = {2017}
}

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31 pages