English

Revisiting Multivariate Time Series Forecasting with Missing Values

Machine Learning 2026-02-03 v3 Artificial Intelligence Machine Learning

Abstract

Missing values are common in real-world time series, and multivariate time series forecasting with missing values (MTSF-M) has become a crucial area of research for ensuring reliable predictions. To address the challenge of missing data, current approaches have developed an imputation-then-prediction framework that uses imputation modules to fill in missing values, followed by forecasting on the imputed data. However, this framework overlooks a critical issue: there is no ground truth for the missing values, making the imputation process susceptible to errors that can degrade prediction accuracy. In this paper, we conduct a systematic empirical study and reveal that imputation without direct supervision can corrupt the underlying data distribution and actively degrade prediction accuracy. To address this, we propose a paradigm shift that moves away from imputation and directly predicts from the partially observed time series. We introduce Consistency-Regularized Information Bottleneck (CRIB), a novel framework built on the Information Bottleneck principle. CRIB combines a unified-variate attention mechanism with a consistency regularization scheme to learn robust representations that filter out noise introduced by missing values while preserving essential predictive signals. Comprehensive experiments on four real-world datasets demonstrate the effectiveness of CRIB, which predicts accurately even under high missing rates. Our code is available in https://github.com/Muyiiiii/CRIB.

Keywords

Cite

@article{arxiv.2509.23494,
  title  = {Revisiting Multivariate Time Series Forecasting with Missing Values},
  author = {Jie Yang and Yifan Hu and Kexin Zhang and Luyang Niu and Philip S. Yu and Kaize Ding},
  journal= {arXiv preprint arXiv:2509.23494},
  year   = {2026}
}
R2 v1 2026-07-01T06:01:32.436Z