Chemical Physics · Physics
Reduced variance analysis of molecular dynamics simulations by linear combination of estimators
Samuel W. Coles, Etienne Mangaud, Daan Frenkel, Benjamin Rotenberg
2021-05-18
Materials Science · Physics
Analyzing melts and fluids from ab initio molecular dynamics simulations with the UMD package
Razvan Caracas, Anais Kobsch, Natalia V. Solomatova, Zhi Li +2
2021-09-08
Pattern Formation and Solitons · Physics
rd-spiral: An open-source Python library for learning 2D reaction-diffusion dynamics through pseudo-spectral method
Sandy H. S. Herho, Iwan P. Anwar, Rusmawan Suwarman
2025-06-26
Soft Condensed Matter · Physics
relentless: Transparent, reproducible molecular dynamics simulations for optimization
Adithya N Sreenivasan, C. Levi Petix, Zachary M. Sherman, Michael P. Howard
2024-08-07
Instrumentation and Methods for Astrophysics · Physics
RadVel: The Radial Velocity Modeling Toolkit
Benjamin J. Fulton, Erik A. Petigura, Sarah Blunt, Evan Sinukoff
2018-03-28
Chemical Physics · Physics
MDRefine: a Python package for refining Molecular Dynamics trajectories with experimental data
Ivan Gilardoni, Valerio Piomponi, Thorben Fröhlking, Giovanni Bussi
2025-05-19
Computational Engineering, Finance, and Science · Computer Science
Chem3DLLM: 3D Multimodal Large Language Models for Chemistry
Lei Jiang, Shuzhou Sun, Biqing Qi, Yuchen Fu +4
2025-08-15
Chemical Physics · Physics
Computing three-dimensional densities from force densities improves statistical efficiency
Samuel W. Coles, Daniel Borgis, Rodolphe Vuilleumier, Benjamin Rotenberg
2019-08-22
High Energy Physics - Experiment · Physics
Reduced Simulations for High-Energy Physics, a Middle Ground for Data-Driven Physics Research
Uraz Odyurt, Stephen Nicholas Swatman, Ana-Lucia Varbanescu, Sascha Caron
2024-07-12
Computational Physics · Physics
PLUMED 2: New feathers for an old bird
Gareth A. Tribello, Massimiliano Bonomi, Davide Branduardi, Carlo Camilloni +1
2014-10-07
Computer Vision and Pattern Recognition · Computer Science
MDsrv -- visual sharing and analysis of molecular dynamics simulations
Michelle Kampfrath, René Staritzbichler, Guillermo Pérez Hernández, Alexander S. Rose +4
2022-06-09
Computational Physics · Physics
dlmontepython: A Python library for automation and analysis of Monte Carlo molecular simulations
T. L. Underwood, J. A. Purton, J. R. H. Manning, A. V. Brukhno +4
2021-04-09
Numerical Analysis · Mathematics
Tensor-based dynamic mode decomposition
Stefan Klus, Patrick Gelß, Sebastian Peitz, Christof Schütte
2019-08-14
Machine Learning · Computer Science
RL-MD: A Novel Reinforcement Learning Approach for DNA Motif Discovery
Wen Wang, Jianzong Wang, Shijing Si, Zhangcheng Huang +1
2022-10-03
Computational Engineering, Finance, and Science · Computer Science
PyRDM: A Python-based library for automating the management and online publication of scientific software and data
Christian T. Jacobs, Alexandros Avdis, Gerard J. Gorman, Matthew D. Piggott
2015-12-24