Relational Databases (RDBs) are the backbone of modern business, yet they lack foundation models comparable to those in text or vision. A key obstacle is that high-quality RDBs are private, scarce, and structurally heterogeneous, making internet-scale pre-training infeasible. To overcome this data scarcity, we introduce RDB-PFN, the first relational foundation model trained purely via synthetic data. Inspired by Prior-Data Fitted Networks (PFNs), where synthetic data generated from Structural Causal Models (SCMs) enables reasoning on single tables, we design a Relational Prior Generator to create an infinite stream of diverse RDBs from scratch. Pre-training on over 2 million synthetic single-table and relational tasks, RDB-PFN learns to adapt to any new database instantly via genuine in-context learning. Experiments show that RDB-PFN achieves strong few-shot performance on 19 real-world relational prediction tasks, outperforming state-of-the-art tabular foundation models evaluated on the same DFS-linearized inputs, while using a lightweight architecture and fast inference. The code is available at https://github.com/MuLabPKU/RDBPFN.
@article{arxiv.2603.03805,
title = {Relational In-Context Learning via Synthetic Pre-training with Structural Prior},
author = {Yanbo Wang and Jiaxuan You and Chuan Shi and Muhan Zhang},
journal= {arXiv preprint arXiv:2603.03805},
year = {2026}
}